Gene Spea_1923 details

Gene Information

• Locus tag: Spea_1923
• Symbol: tmk
• ID: 5662317
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 2334020
• End bp: 2334664
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641236512
• Product: thymidylate kinase
• Protein accession: YP_001501780
• Protein GI: 157961746
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0125] Thymidylate kinase
• TIGRFAM ID: [TIGR00041] thymidylate kinase

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATACAC CAGTAACAGC AGCGCAATCA GCCAAATTTA TCGTTATCGA AGGGCTAGAA 
GGGGCAGGCA AGTCAAGCGC GATAGCCCTT GTTCGAGACT TTATTGAAAA GCATACTGGT 
AAAGCACCAA TTTGCACCCG TGAGCCAGGT GGTACACCGC TCGCCGAGCA GATGCGCGAT 
TTGGTGAAAA TTGCTAACGA ATCAGACCCT CTTTGCGATG AAGCCGAATG CCTACTCTTT 
TATGCGGCGA GAGCGCAACT GGTTGCTAAC GTGATTAAAC CAGCTTTAGC GAACGGCGAG 
TGGGTGTTAG GCGATAGACA TAACTTGTCT TCTCTCGCCT ATCAAGGTGG GGGGCGTAAA 
CTGATGCCTT TGGTATCGGC GATTAGCGAT GCCACGTTAA AAGGTTTCAA GCCTGATTTA 
ACACTCTATC TCGATATAGA CCCTAAGCTG GGTCTCGAGC GTGCGGCTCG CCGGGGTGAG 
CTGGATCGTA TTGAGCAACA AGAAATCGAA TTTTTTAAAC GTACTAGGGC GACTTTCTTG 
TCGTTCGCCG ATGCCGATGA GTCTATTAAA ATCGTCGATG CCAGCCAGAG TATGGCTGAA 
GTTCATAAAG ATATTATTGC TCTTCTTCAA GAGCAGAGTT GGTAA 

 

Protein sequence

MNTPVTAAQS AKFIVIEGLE GAGKSSAIAL VRDFIEKHTG KAPICTREPG GTPLAEQMRD 
LVKIANESDP LCDEAECLLF YAARAQLVAN VIKPALANGE WVLGDRHNLS SLAYQGGGRK 
LMPLVSAISD ATLKGFKPDL TLYLDIDPKL GLERAARRGE LDRIEQQEIE FFKRTRATFL 
SFADADESIK IVDASQSMAE VHKDIIALLQ EQSW