Gene Spea_1904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1904 
Symbol 
ID5662298 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp2314764 
End bp2315954 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content48% 
IMG OID641236493 
Productlytic murein transglycosylase 
Protein accessionYP_001501761 
Protein GI157961727 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02282] lytic murein transglycosylase B
[TIGR02283] lytic murein transglycosylase 


Plasmid Coverage information

Num covering plasmid clones0 
Plasmid unclonability p-value0.00000000413322 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTAAAAT CAATCCCCCT GGCTACAGCG CTAATCCTAT CTACTTCTGC TGCTTATGCG 
GCAGACGAGC AGCCTAATTG GGCTAGCTGC GTGGCCGAGC TACAACAAAC GGCAAAAGCA 
GAAGGTCTAT CTCAACAGAC CATAGAGACC ACGTTGGCCA ATGTTAAGTA CGTGCCGAGA 
GTGATTGAAC TCGATCAAAA ACAACCTGAA TTTAGCACGT CTTTTGAAAA TTATTTTAGT 
AAGCGGGTAA CAGATTGGCG AGTGGAGCAG GGGCGTAAGC TCTATAGTGA GCACAAAGTA 
TTGTTACAAA AACTGGCAAA AGAATATGGC GTGCCGCCTC AGTACCTGCT TGCATTCTGG 
GGACTAGAAA CTAATTTTGG CTCTTATAAG GGCAAGATGT CGGTATTAGA TTCATTGGCA 
ACCTTGGCTT GCGATCCAAG GCGCAGTCGT TATTTCACCA CTGAGTTGAT GCAAGCATTA 
AAGCTTAAAG AGCGATACAA CTTTGATGAA GCTGATATGG TCGGGTCTTG GGCTGGTGCC 
ATGGGACACA CTCAATTTAT GCCGTCGGCC TATGCAAAAT ACGCTGTGGA TGGCAATGGT 
GATGGTAAAG CAGACCTGTG GAACAGTACC GAAGATGCTT TAACCTCTGC GGCTAACTTC 
TTACAAAATC TAGGTTGGAA ACGCAATGAA CGTTGGGGGC GAGAAGTCAC CTTACCGGAA 
AACTTCTCAT ACGCGCACTT AGGCAAAGCC GAGTCTCAGC CGCTTACTCG TTGGGCAGAG 
CTGGGGATCA CACAAACCAA TGGTGCACCG TTAAGTACGC CAGATATGCA AGCTGCACTT 
TACCTGCCGT CGGGTCATAC GGGCCCCGCA TTTTTAGGTT ATGACAACTT TGATGTGATC 
ATGCGCTGGA ATCGCTCAAC CTTTTACGCC ATCGCAGTAG GTCACCTTGC CGACAGAATC 
AATGGCGCTG TAGCGCTAAA AGTGACACCA CCTAAGATGC CAAACTTGAG TCGTGCTCGA 
GTTAAAGAGC TGCAAAACCA GCTGAACCAT TTAGGTTATG ATGTGGGTAA GGCCGATGGC 
ATTTTGGGCT CAAAGTCGGT TAAAGGCTTA CAGAGCTTCC AAAAGAGTCA GGGGCTTGTT 
GCCGACGGCT ACCCGGATGA AGCGACGTTT AAGGCGCTAA AGGTTAAGTA A
 
Protein sequence
MLKSIPLATA LILSTSAAYA ADEQPNWASC VAELQQTAKA EGLSQQTIET TLANVKYVPR 
VIELDQKQPE FSTSFENYFS KRVTDWRVEQ GRKLYSEHKV LLQKLAKEYG VPPQYLLAFW 
GLETNFGSYK GKMSVLDSLA TLACDPRRSR YFTTELMQAL KLKERYNFDE ADMVGSWAGA 
MGHTQFMPSA YAKYAVDGNG DGKADLWNST EDALTSAANF LQNLGWKRNE RWGREVTLPE 
NFSYAHLGKA ESQPLTRWAE LGITQTNGAP LSTPDMQAAL YLPSGHTGPA FLGYDNFDVI 
MRWNRSTFYA IAVGHLADRI NGAVALKVTP PKMPNLSRAR VKELQNQLNH LGYDVGKADG 
ILGSKSVKGL QSFQKSQGLV ADGYPDEATF KALKVK