| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1853 |
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| Symbol | |
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| ID | 5662248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2255283 |
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| End bp | 2255975 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641236443 |
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| Product | nucleotidase |
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| Protein accession | YP_001501711 |
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| Protein GI | 157961677 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0846682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGTATA AATGGGTACT TTTTGACGCC GATGAAACCT TGTTTCACTT CGATGCATTT
CAAGGGTTAC AGCTGATGTT CTCCCGTTTT GATGTGGATT TTACTCGTCA AGACTTCATG
CAATATCAAA CGGTTAACCA GCCACTTTGG GTAGACTATC AAGATGGCAA ACTGACCGCC
AAAGAACTAC AAAATATTCG TTTCGAATCT TGGGCGCAGA AACTGGCAGT TTCAACCCAG
AGGCTTAATA GTGACTTTTT AAAGGCCATG GCGGAGATCT GTCAGTTACT ACCCGGGGCA
CAAGAACTGA TTGATAGCCT TTCTGGTCGG GTCAATATGG GGATCATTAC CAATGGCTTT
ACCGAGTTGC AAACGGTACG ACTCGAGAAG GTCGGCTTAG CTCAGCATTT CTCGCCCCTA
GTGATCTCTG AAGAGGTCGG AATGGCTAAG CCAGATATCG GCATTTTTAA CCACGCCTTT
GCTATGATGG GCCACCCAGC TAAAGAGTCG GTGTTAATGG TGGGCGATAA CCCTCATTCT
GATATTCTAG GTGGGTTAAA TGCTGGTATT CACACCTGCT GGCTTAATAG TCATGGAGCC
GAAAAACCCC ATGATATCGA CCCTCACTAT CAGGTGAGTT CGTTATGCGA ATTAAGACTA
TTACTCACCG ATAAGACCAT TAATCCGAGT TAA
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| Protein sequence | MQYKWVLFDA DETLFHFDAF QGLQLMFSRF DVDFTRQDFM QYQTVNQPLW VDYQDGKLTA
KELQNIRFES WAQKLAVSTQ RLNSDFLKAM AEICQLLPGA QELIDSLSGR VNMGIITNGF
TELQTVRLEK VGLAQHFSPL VISEEVGMAK PDIGIFNHAF AMMGHPAKES VLMVGDNPHS
DILGGLNAGI HTCWLNSHGA EKPHDIDPHY QVSSLCELRL LLTDKTINPS
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