| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1781 |
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| Symbol | |
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| ID | 5662176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 2175365 |
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| End bp | 2176471 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641236371 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001501639 |
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| Protein GI | 157961605 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.253325 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTATC AGGCCTATCG GAAAATTGAT TTAAGGTCTG CTTACATGGA AGCGTTAAAT
AAGAAAGTCA TCATCCTATC TATACTGCTA GCAACACTAT TAACAGCCTG TAGCGAAGAA
GAACAAGCCA AAGAGGAAGA GAAGTATGCC GTCCCCGTAG AAACAGCCAC TGTAATACAA
GGTGATGTGT CCTCTTTCTA TAGCACCACA GCCACACTTG AAGCCCCTCA AGAAGCCAAA
GTCGTTACCC GCGTCGCAGG GCTCATCCGA TCAATTGAGG TTGAAGAAGG TGACAGAGTT
AAAAAAGGTC AGCTATTGGC TGTAATTGAC TCAAAAAGGC AGAAATTTGA TTTAGACCGC
TCTCAAGCCG AAGTCGAAAT CATTGAGCAA GAATTAAATC GCCTTAAGAA AATTAGTAAT
AAAGAGTTTT TCAGTGCCGA CTCGATGGCA AAGCTTGAAT ACAACCTACA GGCTGCCATG
GCAAAACGCG ATTTAGCCGC ATTATATGTC CAAGAAAGCA TGATCCGCTC GCCTATCGAC
GGCATAGTGG CTACCCGCTT TGTGAAGTCT GGCAATATGG CCAAAGAGTT TGATGAGCTA
TTTTATGTGG TCAATCAAGA CGAGCTCTAC GGCATTGTGC ATCTGCCAGA GCAGCAACTT
CAGCACCTGC GTCTAGGACA AGACGCCGAG ATCTACGCTA ATAAACATAT CCAACAAACT
ACACACGCCA GCGTATTACG CATCAGCCCG ATTGTTGACT CACAAAGTGG CACCTTTAAA
GTTACCCTTT CAGTCCCTAA TCAAAACGCG ACATTAAAAG CCGGCATGTT TACCCGTGTA
GAGCTTAAGT ACGATACCCA CAACAATGTC ATTACCGTGC CTTATAACGC AGTGATCAAT
CAAGACAATG AGTTTGCCCT CTACGTTATT GATGGTGACA ACGCTAATCG ACGCAGCGTC
TCTCTTGGCT ATCGTGAAGC CGATACCGTT GAAGTCGTCG CGGGGATCGA ACCGGGTGAG
CAGATTGTGA TCCGCGGTCA GCAAAACCTA AAAGATAAAT CATTAGTTGA AGTGATCAAT
TCTGTCGACA TAGCGTCAGC TAAATAG
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| Protein sequence | MLYQAYRKID LRSAYMEALN KKVIILSILL ATLLTACSEE EQAKEEEKYA VPVETATVIQ
GDVSSFYSTT ATLEAPQEAK VVTRVAGLIR SIEVEEGDRV KKGQLLAVID SKRQKFDLDR
SQAEVEIIEQ ELNRLKKISN KEFFSADSMA KLEYNLQAAM AKRDLAALYV QESMIRSPID
GIVATRFVKS GNMAKEFDEL FYVVNQDELY GIVHLPEQQL QHLRLGQDAE IYANKHIQQT
THASVLRISP IVDSQSGTFK VTLSVPNQNA TLKAGMFTRV ELKYDTHNNV ITVPYNAVIN
QDNEFALYVI DGDNANRRSV SLGYREADTV EVVAGIEPGE QIVIRGQQNL KDKSLVEVIN
SVDIASAK
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