| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1678 |
|---|
| Symbol | |
|---|
| ID | 5662074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 2035508 |
|---|
| End bp | 2037052 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641236265 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001501537 |
|---|
| Protein GI | 157961503 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1288] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.113687 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCCTG TTAACTCTTT TAATACGCTT GAGGATCAGC CTGTTACTGC AAAAGTAACG
TGGAAAATGC CTGATACCTT AGTCATTATC TTCTTCGTTG CCATTGCTGC GGCCCTTCTG
ACTTACTTTG TACCTATTGG TTCTTTTCAA ACTCAAGATG TTACTTACGT TGTGGATGGA
GTGGAAAAGA GCCGTAGTGT GATAGATCCC GATTCCTTCG CCTACGAGAT CAACGATAGC
GGCGAGCCTA TACTACAACC CGTTGCGTTT TTTGAAGGAC ACGGTGGAGT AGGCTTCTTT
AACTTTGCCT TCGAAGGACT GGTGTCAGGC TCTAAATGGG GCAGCGCCAT TGGCGTCATC
ATGTTTATGC TCGTTATTGG TGGTGCCTTT GGCATAGTGA TGGCAACGGG CACCATAGAT
AACGGTATTT TAAAGCTTAT CGATCGCACC CGCGGCAACG AAGCGCTGTT TATTCCAGTG
ATTTTCACTC TATTCTCTCT TGGCGGGGCC GTATTTGGTA TGGGGGAGGA GGCTATCGCG
TTTGCGATTA TTATCTGCCC GCTGATGATC CGCTTAGGTT ACGATGGCAT TACTACAGTG
ATGGTGACCT ATGTTGCAAC TCAGATAGGT TTCGCTTCGT CTTGGATGAA TCCCTTCAGT
GTCGCTATCG CCCAAGGGAT CGCTGGCGTA CCTGTGTTAT CGGGTTCTGG TATGCGTTTT
GTTATGTGGG CCAGTTTTAC CCTGATGGGG CTTATCTTTA CCATGCGCTA TGCCGCTAAA
GTTAAAGCGA CTCCTACGCA TTCTTTTAGT TTCCAGAGTG ATAGCTACTT TAGAGAAAAT
CTAAAAGATT CCAAACTGGA AAGCCGTTTT AACTTCGGTG ATATCTTGGT ATTGCTCACC
ATTTTCGCAA CGGTTGCGTG GATCATCTGG GGTGTGATTG CCAAGGCTTG GTTTATCCCC
GAGATTGCCA GTCAATTTTT CACCATGGGA ATTATTGTCG GCATTATTGG CGTTGTTTTT
AAGCTTAACA ATATGGATAT TAATACCGTG GCGAGTAGCT TTAAGCTGGG CGCCGCGACT
ATGCTTGAAC CTGCCGTTTT GGTGGGGTGT GCGTCGGGGA TCTTGTTGTT GCTTGGGGGC
GGTGATGCCT CAACTCCCAG TGTGCTTAAT ACCATACTCA GTAAAGCGGG GGAGTTTATC
GGTCAGCTAC CAAGCGTGAT GTCTGCTTGG TTTATGTACG TGTTCCAATC GGTGTTTAAC
TTCTTTGTGA CTTCAGGCTC AGGGCAGGCG GCACTCACCA TGCCATTAAT GGCACCCCTT
GCCGACTTGG TTGGCGTGAC TCGCCAAGTG GCAGTGTTGG CATTCCAATT AGGCGATGGC
TTTACTAACA TATTGGTACC GACATCGGCA TCCTTGATGG CAACATTAGG CGTGTGTCGT
GTTGACTGGG GGCAGTGGCT TAAGTTTATC TGGCGCTTTA TGCTGACACT GTTTGTGGTT
TCAAGTGCAA TCGTGATCGG CGCGCACTAC ATGGGCTTTA GTTAA
|
|---|
| Protein sequence | MDPVNSFNTL EDQPVTAKVT WKMPDTLVII FFVAIAAALL TYFVPIGSFQ TQDVTYVVDG
VEKSRSVIDP DSFAYEINDS GEPILQPVAF FEGHGGVGFF NFAFEGLVSG SKWGSAIGVI
MFMLVIGGAF GIVMATGTID NGILKLIDRT RGNEALFIPV IFTLFSLGGA VFGMGEEAIA
FAIIICPLMI RLGYDGITTV MVTYVATQIG FASSWMNPFS VAIAQGIAGV PVLSGSGMRF
VMWASFTLMG LIFTMRYAAK VKATPTHSFS FQSDSYFREN LKDSKLESRF NFGDILVLLT
IFATVAWIIW GVIAKAWFIP EIASQFFTMG IIVGIIGVVF KLNNMDINTV ASSFKLGAAT
MLEPAVLVGC ASGILLLLGG GDASTPSVLN TILSKAGEFI GQLPSVMSAW FMYVFQSVFN
FFVTSGSGQA ALTMPLMAPL ADLVGVTRQV AVLAFQLGDG FTNILVPTSA SLMATLGVCR
VDWGQWLKFI WRFMLTLFVV SSAIVIGAHY MGFS
|
|---|
| |