Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1625 |
Symbol | |
ID | 5662022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1965468 |
End bp | 1967486 |
Gene Length | 2019 bp |
Protein Length | 672 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641236213 |
Product | DNA topoisomerase III |
Protein accession | YP_001501485 |
Protein GI | 157961451 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCTTAT ATATTGCTGA AAAACCCAGC CTTGGTAGAG CTATTGCCGA TGTGTTGCCT AAACCCTTAA AGAAAGGTGA TGGCTTTATT CGCGCCGCAA ATGGCGATTG TGTCTCTTGG TGTGTCGGTC ATTTACTCGA ACAGGCTGAA CCAGATGCAT ACTCACCAGA GTACAAGTCA TGGAAGTTCG AGCATCTGCC AATCGTGCCA GAGACCTGGA AGATGAAGCC TAAATATAAG ATGCGCGGCC AGATAGCGGT GCTGCGAGGC TTAGTCAAAG AGGCGAGCCA GCTCGTAAAT GCCGGCGACC CGGATAGAGA AGGGCAGCTA TTGGTCGATG AGATCATTGC CCACTTAGGC GTAAAAGGCC CAAAATTGCA AAACGCGCAG CGTCTACTCA TCAGTGACTT GAATCCACAA GCGGTGAAAA GGGCATTAGG GCAGTTACGC TCTAACCGCG AGTTTATTCC TCTGTCGACC TCAGCCTTAG CGCGCTCTCG CGCCGATTGG CTCTATGGCA TGAATATGAC CCGGGCTTAC ACCATTCAAG GGCGCAAAGT CGGCTATCAA GGCGTGCTGT CTGTTGGGCG GGTGCAAACT CCTGTGCTGG GCTTAGTGGT TCGCCGCGAC GCCGAAATTG CCGAGTTTAT CTCTAAACCT TTCTATGAGG TGTTGGCGCA TTTAGCGACC GATAATCAGC AGCGATTTAG TGCAAAATGG CAACCAAGTG AGGCCTGCCA GCCTTATATG GATGAAGAGG GGCGAGTACT CTCAAAAGGG TTAGCGCAAA ACGTAGTCGG GCGTATAAAT GGCCAAAACG GCACCGTAGA AAAGGTAACA GCACAAGATA AGAAACAAAA TGCACCTTTG CCTTATAGCT TATCGGCACT GCAGATTGAT GCGGCTAAAC GCTTCGGTAT GAGTGCAAAG TCAGTACTCG ATACCTGCCA GTCTTTATAT GAAAAACATA AGCTTATCAC CTATCCCCGT TCAGATAGCC GTTATCTACC TGCTGAACAA CATGCTTTGG CTCCGAGCGT CATAGGTGCC GTACTGAATG GTGCCAGTGA GTTAGTGTCA GGCATAGAGC AACCTAATAG CAAGCTTAAA TCTAAGGCGT GGAATGATAA AAAGGTTGAG GCTCACCACG CGATAGTGCC GACCGAGAAG ACCGCTAATT TACAAAACTT AAATCAGGCT GAGAAGCAGT TGTATCTACA GGTTGCTCGT CAGTATTTGA TGCAATTTTA TCCTGCGTAT CTTTATAAAG AGACTCAAGT TGAGATAATC ATTGCAGGTG GCTTATTTAA AACCAAGGCC AAACAAGAGG TGGCATTGGG TTGGAAGCAA CTGCTTAAGC AAAATAAAGA GAAGAGCCAA AGCGAAAAGC AACAAACTGA TGATGACGAG TATCTAGCCA ACATTCCCGC CCTAAAAAAG GGCCAAATTC TGTTATGTGA GCGCGGTGAG TTACTGGAGA AACAGACTCA GCCACCAAAG CACTTTAGCG ATGCCACTTT ACTGGGCGCG ATGACAGGGA TCAGCCGTTA TGTGACCGAC AGTGAGATCC GCAAAATATT AAAGGAGACT GATGGGCTCG GTACCGAGGC GACTCGCGCT GGGATCATCG AGTTGTTGTT TAAGCGAAAC TACCTAACGC GTCAAGGTAA GTCTATTTTA GCGACAGAGG TAGGCAAGGG TTTGATAAAC AGCTTACCCC TGAGTGCGAC CACACCGGAC ATGACGGCAC TTTGGGAAAA TAATCTCGAT GCTATTAGTC GTAAAGAGGC TAAATATCAA AGCTTTATGG CGCCTTTATT AATATCACTG CAGCAGCTTA TCGAGCAGGC TGGGGCGCAG TTACCCACCT CGTTGCAGGG CGTTAAATCT CCTGATAGCG GCTTTAAAAA GCGTCGTTAC TCGGGCAATA AGAGTGCGGC TACGACAAAA TCGGCTACAG CTAAGAAAGC GTCAGCTAAA AGAGTGAGTA CGACTAAGGC TAAGAGAGCG ACCTCCTAA
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Protein sequence | MILYIAEKPS LGRAIADVLP KPLKKGDGFI RAANGDCVSW CVGHLLEQAE PDAYSPEYKS WKFEHLPIVP ETWKMKPKYK MRGQIAVLRG LVKEASQLVN AGDPDREGQL LVDEIIAHLG VKGPKLQNAQ RLLISDLNPQ AVKRALGQLR SNREFIPLST SALARSRADW LYGMNMTRAY TIQGRKVGYQ GVLSVGRVQT PVLGLVVRRD AEIAEFISKP FYEVLAHLAT DNQQRFSAKW QPSEACQPYM DEEGRVLSKG LAQNVVGRIN GQNGTVEKVT AQDKKQNAPL PYSLSALQID AAKRFGMSAK SVLDTCQSLY EKHKLITYPR SDSRYLPAEQ HALAPSVIGA VLNGASELVS GIEQPNSKLK SKAWNDKKVE AHHAIVPTEK TANLQNLNQA EKQLYLQVAR QYLMQFYPAY LYKETQVEII IAGGLFKTKA KQEVALGWKQ LLKQNKEKSQ SEKQQTDDDE YLANIPALKK GQILLCERGE LLEKQTQPPK HFSDATLLGA MTGISRYVTD SEIRKILKET DGLGTEATRA GIIELLFKRN YLTRQGKSIL ATEVGKGLIN SLPLSATTPD MTALWENNLD AISRKEAKYQ SFMAPLLISL QQLIEQAGAQ LPTSLQGVKS PDSGFKKRRY SGNKSAATTK SATAKKASAK RVSTTKAKRA TS
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