Gene Spea_1561 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1561 
Symbol 
ID5661958 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp1895194 
End bp1895838 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content43% 
IMG OID641236149 
ProductTetR family transcriptional regulator 
Protein accessionYP_001501421 
Protein GI157961387 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAGA AAACTCCCCC AAAAGGCATT GCTGAACAAG CGACGGAAAA AGCCGCCGAA 
CAAAATGTTC GAGTAGCGCT TATCCGTGCT GCTAACCAAT GCTTTACCGC TTCAGATTAT 
GATAGCGTCA GCATTAGGAA AATTGCGCAG CAGGCTGGCG TTAACATGGC GATGATCCGT 
TATTACTTTG GTAATAAGTT AGGACTATTT GAAGCCATGG TGACTGAGCA GATCCATCCT 
ATCCATCAAA GGGCTAAGAC GCTGCAAAAG CATCAAGCTA AGCCTACGAT CGCAGATCTG 
ATCAATGAGT TTTACCAAAC CATGATCCCT AATCCAGATT TCCCCCGTTT TTTATTTCGC 
TTAATGAACT CAGATGGCTC AAGTGAGGCT AAAGAGGTTA TTTTTAAACT CTTTACGCCT 
ATTGTTGAGC TGACGCCTAT GCCCAAAGCG TTACTCGAAG AGTGCGGTGA CTTCGACCCT 
ATGATGGTGA AGATGTCGTT ACTCAGCCTT ATGATTTTTC CCTTTGTCAT GCCGTTATCA 
ATGGCAAAAC TGCACGGTTA TCAACTTAAT GATGAATTTT ATACTCAATT GGCCAAACAC 
AATATTGCAC TTATCCAGCA CGGACTCTTT GGAGGTCAGC AATAA
 
Protein sequence
MSEKTPPKGI AEQATEKAAE QNVRVALIRA ANQCFTASDY DSVSIRKIAQ QAGVNMAMIR 
YYFGNKLGLF EAMVTEQIHP IHQRAKTLQK HQAKPTIADL INEFYQTMIP NPDFPRFLFR 
LMNSDGSSEA KEVIFKLFTP IVELTPMPKA LLEECGDFDP MMVKMSLLSL MIFPFVMPLS 
MAKLHGYQLN DEFYTQLAKH NIALIQHGLF GGQQ