| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1473 |
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| Symbol | secF |
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| ID | 5661870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1796529 |
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| End bp | 1797476 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641236061 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001501333 |
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| Protein GI | 157961299 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.13163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTACAGG TTTTAAATGT TAAAGGTACA GTCAACTTCC TGCGTCACGC ACTTCCTATC
AGTATTTTAT CTGCTGTGTT AGTGCTAGGT TCGATTGTGA CCTTAGCAAC AAAAGGTATT
AACTGGGGAT TAGACTTCAC CGGTGGTACC GTTGTTGAGC TTGAATTTTC TAAGCCCGCT
GATTTGAATG CAATTCGCAC GAATCTCTCA AGTGAGTCGG TAGCTGGTGC ATTGGTACAG
AACTTCGGTT CTAGCCGCGA TGTGCTTATT CGTCTTCCTG TTAAAGATGA CTTTAAGAGT
GAAGATCAAG TCAATGACGT AATGGCTGCA GTGACTCAGC TTGACTCTGC TGTTATTCAA
AAGCGTGTCG AGTTTGTTGG GCCTCAAGTA GGTAAAGAAC TTGCAGAGCA GGGTGGACTA
GCGGTTTTAG TCGCTTTGAT ATGTATTCTT ATCTACGTAT CTTTCCGTTT CGAATGGCGT
CTAGCCTTAG GTTCGGTTGC TGCTTTGGCG CATGACGTCA TTGTCACTCT GGGTGTGTTC
TCGCTATTGC AGTTAGAGTT CGATCTAACC GTATTAGCTG GTCTGCTAAC GGTTGTCGGT
TACTCGCTTA ACGATACCAT CGTTGTATTT GACCGAATTC GAGAGAACTT CCTTAAGCTA
CGTAAGAGCT TGCCAGAAGA AGTGGTTAAT ATTTCGATCA CTCAGACAAT GAGTCGTACC
ATTATCACAA CCGGTACCAC TTTGGTTGTG GTTGTAGCCT TGTTCCTTAA AGGCGGCACC
ATGATCCACG GCTTCGCGAC TGCATTGTTG ATGGGTATTT TTGTCGGTAC TTTCTCATCA
ATCTATGTGG CGAGCTTCTT GGCTATCAAG CTAGGGATCA ATCGTGAGCA CATGATGCCA
GTTGAAATTG AGAAAGAAGG TGCAGATCAA GACACATTAA TGCCTTAA
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| Protein sequence | MLQVLNVKGT VNFLRHALPI SILSAVLVLG SIVTLATKGI NWGLDFTGGT VVELEFSKPA
DLNAIRTNLS SESVAGALVQ NFGSSRDVLI RLPVKDDFKS EDQVNDVMAA VTQLDSAVIQ
KRVEFVGPQV GKELAEQGGL AVLVALICIL IYVSFRFEWR LALGSVAALA HDVIVTLGVF
SLLQLEFDLT VLAGLLTVVG YSLNDTIVVF DRIRENFLKL RKSLPEEVVN ISITQTMSRT
IITTGTTLVV VVALFLKGGT MIHGFATALL MGIFVGTFSS IYVASFLAIK LGINREHMMP
VEIEKEGADQ DTLMP
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