Gene Spea_1307 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1307 
Symbol 
ID5661706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand+ 
Start bp1591696 
End bp1592316 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content44% 
IMG OID641235870 
Producttetratricopeptide TPR_4 
Protein accessionYP_001501169 
Protein GI157961135 
COG category[S] Function unknown 
COG ID[COG2976] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0000516271 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAAATTT ATAGCACAGA AGATCAACAA GTAGATGCTA TCAAACAGTT CTGGAAAGAT 
TACGGTACCT CAATTGTTGT TGGCGCCGTT GTCGGTTTAG GTGGATTATT CGGTTGGAAT 
TATTATTCTG ACTACCAAGT AGCGCAAGCA GAAGCGGCAT CAGAGTCATT TCAGGCACTG 
AGCAGCCAAA ACACTGCCGA TACGGCGATG TTAACTGCGG CGGAGAACTT TGCCAAACAA 
CATGGCCAGA AAGGTTATCA GTCTCTGCTT GAGTTGTTAG TGGCTAAATC TGCGGTAGAA 
AGTGGTGATC TAGCAAAAGG GGAAGTGACC CTTAAAAATG TTATCGCGAC TAATGTTGAT 
AACAGCATTG TGTTGATTGC CACTATGCGT CTTGCACGTG TACAGGCAGA GCTTGGTCAA 
TATGCGACTG CGATCACCAC CCTTGAACAA ATTACCGATC CAGCATCGAA GGCTCAAAGA 
GATGAGCTAA AAGGTGATTT CTTAGTTCGC CAAGGTGAAA CAGAGAAGGC AAAGGTTGCC 
TATCAAACTG CGGTAGACAA TGGTGGCACT ATGACAAGTC CAACATTACA AATGAAGCTT 
GATAATCTGA ACAAGGCATA A
 
Protein sequence
MEIYSTEDQQ VDAIKQFWKD YGTSIVVGAV VGLGGLFGWN YYSDYQVAQA EAASESFQAL 
SSQNTADTAM LTAAENFAKQ HGQKGYQSLL ELLVAKSAVE SGDLAKGEVT LKNVIATNVD 
NSIVLIATMR LARVQAELGQ YATAITTLEQ ITDPASKAQR DELKGDFLVR QGETEKAKVA 
YQTAVDNGGT MTSPTLQMKL DNLNKA