| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1238 |
|---|
| Symbol | |
|---|
| ID | 5661637 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1509927 |
|---|
| End bp | 1511111 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641235800 |
|---|
| Product | glycosyl transferase group 1 |
|---|
| Protein accession | YP_001501100 |
|---|
| Protein GI | 157961066 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0438] Glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGA TGCGCATAGG GATAGTGTGC CACCCCAGTA TTGGTGGTTC AGGGCTAGTG
GCAACAGAAT TGGGGCTTGG GCTTGCTAAG CTTGGCCATG AAGTGCACTT TATATCGAGT
GTGCGCCCTT TTAAATTAAT CGAAGACTCA GACCGATTAT TCTTCCACTC GGTAGAAGCG
ATTAATTATC CGCTATTTTC AGACCCGTTA TACACCTTTG CGTTAACCGC TAAAATTATT
GAGGTCGTAG AGCAATTTAA GCTCGATGTT GTGCACGCTC ATTACTCGAT TCCTCACTCT
CTATGCGCCT ATCTCGCTGG CGAAATTACA ACCCATAAGT TTCCAACTGT GACGACGATT
CATGGCACAG ATGTCACCAT TGTTGGTCAA GATAAGCCGC TTTACCCCCT TAATCGGTTC
AGTATTCATA AAAGCACCAG AGTGACGACA GTGTCGAATT TTCAACGCAA TTATATCTAT
AGTCATTTTG ACAAGACAAA ACCGATAGAG GTCATTCATA ACTTCATTGA CTTAACCGTT
TTCTCACCGG AATTAGCCGA TATTGATGTT CGCCGCAAGA TGGCGAAAGA TGATGAAAAA
ATTGTCATGC ATGTATCAAA TTTTAGGGCG TTAAAAAATA GTGACACCGT AATACGCTCC
TTTCACTTAT TGCGGCGAAA GGTCAAGGCT CGGCTAGTCT TGCTTGGTAG CGGGCCAGAT
ATTGATAACA TTAAGCTGCA ATGTGAAAAG TTGGGAATTT TAAAGTATGT CACCTTTATG
GGGGATGTGA CTCATGTTGA GCACTACCTC CCAAATGCAG ATTGCATGAT CCAACCCAGC
TATCGTGAGT CTTTTAGCAT GGTACTGCTT GAAGCTATGG CCTGTGGGGT ACCGACGGTA
AGCAGTAATG TCGATGGGAT CCCAGAAGTT GTAGATGAAG GGCAAAGCGG ATTTATGTTC
GATCCCGATG ATGCGATTGC AATGGCTAAG TCGATGGGGC AGATCTTGCT CGACCCTGAG
CTACAAAAGC AGATGGGACG TGCGGGTAGG CTGCGGGCTG CTAAGCTTTT TAATCCCGAG
AGAAAAGTCG AGCAATACAT AGCCTGCTAC CGAGAAGCCA TTCAGGATTG CCAATGTGCT
TGTTCATCAG TGCAGACATT ACACGGAGAC AGTAATGAGC AGTAA
|
|---|
| Protein sequence | MSKMRIGIVC HPSIGGSGLV ATELGLGLAK LGHEVHFISS VRPFKLIEDS DRLFFHSVEA
INYPLFSDPL YTFALTAKII EVVEQFKLDV VHAHYSIPHS LCAYLAGEIT THKFPTVTTI
HGTDVTIVGQ DKPLYPLNRF SIHKSTRVTT VSNFQRNYIY SHFDKTKPIE VIHNFIDLTV
FSPELADIDV RRKMAKDDEK IVMHVSNFRA LKNSDTVIRS FHLLRRKVKA RLVLLGSGPD
IDNIKLQCEK LGILKYVTFM GDVTHVEHYL PNADCMIQPS YRESFSMVLL EAMACGVPTV
SSNVDGIPEV VDEGQSGFMF DPDDAIAMAK SMGQILLDPE LQKQMGRAGR LRAAKLFNPE
RKVEQYIACY REAIQDCQCA CSSVQTLHGD SNEQ
|
|---|
| |