Gene Spea_1188 details

Gene Information

• Locus tag: Spea_1188
• Symbol: ispF
• ID: 5661587
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 1442477
• End bp: 1442956
• Gene Length: 480 bp
• Protein Length: 159 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 641235740
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_001501050
• Protein GI: 157961016
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTA GAATTGGTCA TGGCTTTGAT GTTCACAAGT TTGGTGGCGA GCCACCACTT 
ATTCTCGGTG GCATCACGGT GCCTTATGAG GTCGGTTTAA TCGCACACTC TGATGGTGAT 
GTGGTTTTGC ATGCTATCTC GGATGCGATT CTTGGCGCGA TGGCGCTTGG AGATATCGGT 
AAGCATTTTC CCGATACTGA CCCCGACTTT AAGGGCGCCG ATAGCCGAGT GCTATTGAGG 
CACTGCTATA AATTAGCGAT GGATATGGGC TATAGCTTAT CAAACCTTGA TGTGACCGTA 
ATTGCTCAAG CGCCTAAAAT GGCGCCGCAT ATCGAAGCCA TTCGCGCTGT GCTAGCCGAA 
GATTTGGCAT CGGAGATTTG CGATATTAAT GTTAAAGCGA CCACCACCGA AAAATTAGGT 
TTTACCGGCA GAAAAGAAGG CATTGCAGTA GAAGCTGTGG TGTTGATGAT TAAATCATAA 

 

Protein sequence

MKIRIGHGFD VHKFGGEPPL ILGGITVPYE VGLIAHSDGD VVLHAISDAI LGAMALGDIG 
KHFPDTDPDF KGADSRVLLR HCYKLAMDMG YSLSNLDVTV IAQAPKMAPH IEAIRAVLAE 
DLASEICDIN VKATTTEKLG FTGRKEGIAV EAVVLMIKS