| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1187 |
|---|
| Symbol | ispD |
|---|
| ID | 5661586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1441729 |
|---|
| End bp | 1442424 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641235739 |
|---|
| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| Protein accession | YP_001501049 |
|---|
| Protein GI | 157961015 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAAA CACCCAAGCA CATAATCTCG ATAGTCCCCG CTGCTGGTAT AGGCAGTCGT
ATGGGCGCAG AAATTCCAAA GCAATATTTA CAACTTAATG AACAAAGCAT TTTAGGGCAT
ACGCTGGACT GCTTATTATC GCATCCTAGT ATCGAAAAGG TGATCGTGGC GCTTAACCCT
GAAGATGAGT TCTTTGCGCG CTTGCCTCAA GCTCAGCATG CCAAACTACA GGCTGTAATT
GGTGGTAAAG AGCGCGCAGA CTCAGTGCTG TCGGCTTTAA CTGTGGCACC AACGGATGCC
TGGGCGCTAG TGCATGATGC GGCGCGTCCG TGCTTAAACC ATCAAGACAT AGATAAGTTA
ATCGAGTCAG CATCTAGCTT TCCACAAGGC GCTATTCTAG GAGCCCCTGT GCGTGACACC
ATGAAGCGTA GTAATGCACA GGGCTTAATT ACCGAAACGG TTTGCCGCGA AAAGCTGTGG
CATGCACTCA CACCGCAGTT TTTTCCTGTG CAGAATCTAA AGCAAAATCT CAGTAATGCT
TTAGCCGCAG GCGCATTAAT TACCGATGAG GCTTCGGCTA TGGAGTGGGC TGGTGTTGCT
CCAGGCATTG TTGCTGGTCG CGCCGACAAT ATTAAGGTGA CCCATCCAGA CGATCTGCAG
CTAGCCTCGC TATTTCTTAA AAGTGCAGCT CAATAG
|
|---|
| Protein sequence | MSQTPKHIIS IVPAAGIGSR MGAEIPKQYL QLNEQSILGH TLDCLLSHPS IEKVIVALNP
EDEFFARLPQ AQHAKLQAVI GGKERADSVL SALTVAPTDA WALVHDAARP CLNHQDIDKL
IESASSFPQG AILGAPVRDT MKRSNAQGLI TETVCREKLW HALTPQFFPV QNLKQNLSNA
LAAGALITDE ASAMEWAGVA PGIVAGRADN IKVTHPDDLQ LASLFLKSAA Q
|
|---|
| |