Gene Spea_1182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1182 
Symbol 
ID5661581 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1435005 
End bp1437212 
Gene Length2208 bp 
Protein Length735 aa 
Translation table11 
GC content46% 
IMG OID641235734 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001501044 
Protein GI157961010 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.5957e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTATCTG TTCGTGAAGC ACATTTTAGC GACCCTGATT TTCAACTTGA AGAATGGGTG 
CAACGTTATA TTAGTGATGC TTCGGAAGCT CAAATTCTTT TGGCCTTAAT TGAGCGGGTC
GAACTGCTCG TGGGACAAAA GAAAGACGCG AACGTTACTG TCTTAAAACG TGCGCGCGAG
ATGATAGAAA TTCTTGCGCC GCTGAATATG GATATTGAAA CACTGCAGGC CGCCATCTTG
TTTGTGGTGT TTGATGCTGG GCTCATTACT CAAGAAGATA TTGAAGAAGA GTTTGGCGCT
AAGCTAGCCG TGTTGGTGTC GAGTGTTGAG ACCATGAACG CTATTGGCGC CCTGAAAGTT
GATAATCAGA CTCGTAGCGG CGAGCCGCAG ATCGATAATA TTCGTAAGAT GTTATTGGCG
ATGGTGGAAG ATGTGCGCGC GGTGGTGATT AAACTTGCCG AACGCATCTG TTTACTTCGT
GAGATTAAAA ATGCCGATGA GGAGGTAAAA GTCCTTGTCG CCCGCGAGAT TGCCGATATC
TATGCGCCAC TGGCTAACCG TCTTGGTATT GGTCAGCTTA AGTGGGAACT AGAGGATATC
TCATTCCGTT ACCTGCACCC GCAAACTTAT AAAGATATCG CCAAGCAGCT CGATGGTAAG
CGCCTCGATA GAGAAACCTT TATCGATGAC TTCGTCAGCC AGTTGCAGGC GCGACTCGAT
AAAGATCTGA TCCGCGCAAA GGTCTACGGC CGCCCTAAAC ATATCTACAG TATCTGGAAG
AAGATGAAGG GCAAACAGCT CAAATTTGAT GAGCTGTTTG ACGTGCGGGC CGTGCGTATC
GTGACTGACC GCCTACAAGA TTGTTACGGC GCATTAGGCG TAGTGCATAC ACTTTGGCAC
CATATTCCAC GTGAATTTGA TGACTACGTT GCAAACCCTA AGCCAAACGG TTACCAGTCT
ATTCATACCG TGGTGGTTGG GCCTGAAGAT AAAACAGTCG AAATTCAAAT TCGCACCGAG
CAGATGCATG AAGATGCTGA GCTTGGGGTT GCGGCGCACT GGAAATATAA AGAAGGTAGC
GCCAGCGGTA AACAAAGCGG TTATGAAGAA AAGATTAATT GGCTGCGCAA AATCTTGCAG
TGGCAAGAAG ATGTGGCCGA AAGCGGTAAC TTAGTCGATG AAGTTCGTAG TCAGGTATTT
GAAGACCGTG TCTATGTGTT TACTCCAAGC GGCGAAGTGG TTGATTTGCC ATTAGGCTCA
ACGGTACTGG ATTTTGCTTA TTACATTCAC TCTCATGTGG GTCATAAGTG TATCGGTGCC
AAAGTTGATG GCCGCATCGT GCAATTTACT TATCAGGTTG AGACGGGCGA GCGCATAGAG
ATCATTACCT CTAAGCATCC TAATCCTAAG CGAGATTGGT TAAATCCCAA CTTGGGCTAT
ATTCGTACTT CTCGTGCAAG GTCAAAAATT CTGCACTGGT TTAAACAGCA AGATAGAGAT
AAAAATATCA TTGCTGGGCG TGAGATGCTT GAAACCGAAT TAACCAAGAG TCAGTTGCAT
ATTAAAGATG CGCAATCTGC GGTTGAGCGA TTTAATCTAG TTAGTATGGA CGATCTGCTC
GCGGGGATTG GTGGTGGTGA TATTCGCCTT AACCAAGTGG TAAATCATGT TCAGAGTCGC
CTGCGGACTA AAGAGCTCAG TGATGAAGAG GTGGTTGAAG ATTTAGTCAA GAAGAGCCAA
AGCAAGTCGG TTAAAAAGGC CAAAGGCCAA GTTGAGGTTA GCGGCGTTGG TAACTTGATG
AGCCATATCG CTAAATGTTG TCAGCCCGTA CCAGGCGATG AAATTTTTGG CTTTATTACT
AAAGGCCGCG GTATTTCAGT ACACAGAGCC GATTGTGACC AAGTTAAAGA GTTAGTTCGG
GCCTCACCAG AGCGTTCAGT TGAAGTGGTG TGGGGCGAGA ACTATTCCGG TGGCTATAAA
ATTCGCTTAA GTATTTTGGC TAATGACCGC TCAGGACTGC TGCGAGACTT AACCTCAGTG
CTAGCGGCAG AGAAAACCCA CGTGATGGCG ATGAGTTCGA CCTCTGATGT GAAAACACAA
ACCGCCACCA TAGAGTTAGA GCTTGAACTA TATAATCTAG AGGGTTTATC AAAAGTGTTA
TCCAAGATAA ATCAGGTTGA TGGGGTCATG CAGGCCAGAA GACTGTAA
 
Protein sequence
MVSVREAHFS DPDFQLEEWV QRYISDASEA QILLALIERV ELLVGQKKDA NVTVLKRARE 
MIEILAPLNM DIETLQAAIL FVVFDAGLIT QEDIEEEFGA KLAVLVSSVE TMNAIGALKV
DNQTRSGEPQ IDNIRKMLLA MVEDVRAVVI KLAERICLLR EIKNADEEVK VLVAREIADI
YAPLANRLGI GQLKWELEDI SFRYLHPQTY KDIAKQLDGK RLDRETFIDD FVSQLQARLD
KDLIRAKVYG RPKHIYSIWK KMKGKQLKFD ELFDVRAVRI VTDRLQDCYG ALGVVHTLWH
HIPREFDDYV ANPKPNGYQS IHTVVVGPED KTVEIQIRTE QMHEDAELGV AAHWKYKEGS
ASGKQSGYEE KINWLRKILQ WQEDVAESGN LVDEVRSQVF EDRVYVFTPS GEVVDLPLGS
TVLDFAYYIH SHVGHKCIGA KVDGRIVQFT YQVETGERIE IITSKHPNPK RDWLNPNLGY
IRTSRARSKI LHWFKQQDRD KNIIAGREML ETELTKSQLH IKDAQSAVER FNLVSMDDLL
AGIGGGDIRL NQVVNHVQSR LRTKELSDEE VVEDLVKKSQ SKSVKKAKGQ VEVSGVGNLM
SHIAKCCQPV PGDEIFGFIT KGRGISVHRA DCDQVKELVR ASPERSVEVV WGENYSGGYK
IRLSILANDR SGLLRDLTSV LAAEKTHVMA MSSTSDVKTQ TATIELELEL YNLEGLSKVL
SKINQVDGVM QARRL