Gene Spea_1156 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1156 
Symbol 
ID5661555 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1399553 
End bp1400665 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content49% 
IMG OID641235708 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001501018 
Protein GI157960984 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.11518e-09 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGATCAT CCTATTTCCT TTTACCCCTG GCATTAATTA TTGCGGGAGC ATTTACCTTC 
AGTAGTCTGT CTGAAGCTAA GCGTGCCGAC TCAAAAGATA GGCCAGTTCG AACCGTTCCA
GTGGTCACGG GTATCGTTGA ACAACATGAT CTCACTCAGT CTCTCTCCCT GATTGGTAAA
CTCGACGCCG AGCAGTCAGT ATTTATCTCG CCGCAAATTG CCGGCAAGAT TAAATCGATT
CAAGTCAGCA CCGAGCAAGA GATAGCCCAA GGCCAAATCC TAATCCAGCT CGATGATGCT
AAAGCACAAG CCGCCCTAGC CGAATCAGCC GCTTACCTAG CCGATGAAAA GCGTAAACTC
AAAGAGTTCC TCAAGCTAAT CGATCAAAAC GCGATCACTA AGACAGAGAT CGATGCTCAA
AAAGCCAGTG TCGATATGGC TACAGCTCGC TTAGCTGCCG CCCAAGCCGA TCTCGATTAT
CACTACCTCA GCGCGCCCTT TTCTGGTACA GCTGGTCTTA TCGACTTTAG CCAAGGCAAA
ATGGTCAGTG CAGGTACCGA GCTACTCACC CTCGATGACC TTTCGAGTAT GCGCCTCGAC
CTTCAGATAC CGGAGAATTA CCTCTCACAG CTTAGTGTTG GCATGTCTGT AACGGCTAGT
AGCCGTGCTT GGCCACAAAA ACAGTTTATC GGCAAGGTGA TAGCCATCGA TTCCCGTGTC
AATCAAGACA CCCTAAACTT GAGAGTTCGT GTGCAATTTG ACAACCCTAG CCATCGACTC
AAACCCGGCA TGATGATGTC GGCAACCTTG ATGTTCCCAA GTGTTGCGGA GCCAGTTATC
CCAGTGCAAG CGTTAGAGTA TTCGGGTACC AACCGTTTCG TTTATGTGGT TGGTAAAGAC
GGCATCGCCA AGCGTACCAA GGTGACGCTA GGTGCTCGCA TCGAAGACCA AGTACTAATT
AGCAATGGCC TCACTATTGG CGATAAAGTG GTAGTGCAGG GCTTAGTCAA TATGCGTGAT
GGTCTGCGCG TCGATGATCT GGGCGGATCA GCACTGGCAC AAAAAGACGC AGATAAAAAA
GCTGACGAGC AACAAGCAAG AGGAAACATC TAA
 
Protein sequence
MRSSYFLLPL ALIIAGAFTF SSLSEAKRAD SKDRPVRTVP VVTGIVEQHD LTQSLSLIGK 
LDAEQSVFIS PQIAGKIKSI QVSTEQEIAQ GQILIQLDDA KAQAALAESA AYLADEKRKL
KEFLKLIDQN AITKTEIDAQ KASVDMATAR LAAAQADLDY HYLSAPFSGT AGLIDFSQGK
MVSAGTELLT LDDLSSMRLD LQIPENYLSQ LSVGMSVTAS SRAWPQKQFI GKVIAIDSRV
NQDTLNLRVR VQFDNPSHRL KPGMMMSATL MFPSVAEPVI PVQALEYSGT NRFVYVVGKD
GIAKRTKVTL GARIEDQVLI SNGLTIGDKV VVQGLVNMRD GLRVDDLGGS ALAQKDADKK
ADEQQARGNI