| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1140 |
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| Symbol | |
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| ID | 5661539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1376318 |
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| End bp | 1377142 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641235692 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001501002 |
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| Protein GI | 157960968 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.15609 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAACT TGCAAGGGTT AATGGAGCAA GCGCCTGAAC TGATCGTCAC CTACGGTATG
AAAGTGCTGT TCGCGATTAT CATTTTTGTC ATAGGTAAAT TCCTATCGAA TGTTGCCAAG
AATCTAACAT CTAAGCTGCT GAAAAAGCGT AAAGTCGACA ACACAGTTGT GTCGTTTGTT
GCCAATATGG CTTGGGCATT AGTGTTCGTA TTTACCATAG TTGCTACGCT AGGGCAGATA
GGTGTGCAAA CCGCTTCGTT AGTTGCTGTG ATTGGTGCCG CCGGTTTAGC TGTTGGTTTA
GCACTGCAAG GCTCTTTGTC TAACTTTGCT GCCGGGGTAT TGATGGTACT CTTTAGGCCG
TGTCGAGTTG GTGACTATGT GGAAGCGGCG GGCGTTGCTG GTACTGTCGA TGAGATCACT
ATCTTTTCAA CCCGATTACT GACTCCTGAT AATAAGGTTA TTATTGCGCC AAATTCAGCC
ATGATGAACG GCACTATAGT TAACTACTCT GCGATGGACA CTCGTCGTTT AGATTTAGTT
ATTGGGGTTT CTTATGACGC CAATCTTGCC GAGACCAAAA AGGTATTAAC TGACATTCTT
GAAAACAGTC AGTATGTGCT CAAAGATCCT GCCTACACAG TGGCTGTGGC AGAGTTAGCC
GACTCATCGG TTAACTTCGT GGTTCGCCCC TGGGTTAAAG GCTCTGACTA CTGGCCTGCA
CATTTTGAAA TCTTAGAGCA GATAAAGGTC GCTCTAGACG AAGCTGGCAT AGGTATTCCG
TATCCACAAA TGGATCTCTA TGTAAAAGAG ACCCCTGCGG CTTAA
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| Protein sequence | MDNLQGLMEQ APELIVTYGM KVLFAIIIFV IGKFLSNVAK NLTSKLLKKR KVDNTVVSFV
ANMAWALVFV FTIVATLGQI GVQTASLVAV IGAAGLAVGL ALQGSLSNFA AGVLMVLFRP
CRVGDYVEAA GVAGTVDEIT IFSTRLLTPD NKVIIAPNSA MMNGTIVNYS AMDTRRLDLV
IGVSYDANLA ETKKVLTDIL ENSQYVLKDP AYTVAVAELA DSSVNFVVRP WVKGSDYWPA
HFEILEQIKV ALDEAGIGIP YPQMDLYVKE TPAA
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