| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1128 |
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| Symbol | |
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| ID | 5661527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1365400 |
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| End bp | 1366437 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641235680 |
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| Product | twitching motility protein |
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| Protein accession | YP_001500990 |
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| Protein GI | 157960956 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0169735 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAATCA CAGAGTTACT TGCCTTTAGT GTAAAACACA ATGCATCAGA TCTACACCTT
TCAGCGGGTG TTTCTCCCAT GATCCGTGTT GATGGTGAAG TGAGAAAGAT TAATTTACCC
GCTTTAGATC ACCAAGGTGT ACATAGCTTA GTCTACGACA TCATGAACGA TAAGCAGCGT
AAGGATTATG AAGAGCACCT AGAGATAGAT TTCTCGTTTG AAGTGCCGGG TCTTGCACGT
TTTCGTGTTA ATGCTTTTAA CCAGTCTCGT GGTTCGGCGG CGGTTTTCCG TACCATTCCC
AGTGACATCT TGAGTCTGGA GCAATTAGGC GCACCGGAGA TCTTCAAAAA AATCTCAAGT
TTCCCCCGTG GTCTAGTATT GGTCACCGGC CCAACTGGCT CGGGAAAGAG TACCACCTTG
GCGGCAATGA TCGATTATGT GAACGAAAAC CGTCACGACC ACATTCTGAC CATTGAAGAT
CCGATAGAAT TTGTTCATCA AAATAAGCAG TGCTTGATTA ACCAACGTGA AGTGCATCGC
CATACCCACA GCTTTAACGC GGCACTGAGA AGTGCACTGC GTGAAGATCC AGACGTGATC
TTAGTCGGTG AGATGCGAGA TCTTGAAACC ATTCGTCTGG CGATGACAGC GGCGGAAACG
GGTCACTTAG TCTTTGGAAC CCTGCATACC ACCTCTGCGG CTAAAACCAT TGACCGTATT
GTCGACGTTT TCCCTGAAGG TGAGAAAGGC ATGGTAAGAA CCATGTTGTC TGAATCTTTG
CAGGCGGTTA TCTCTCAGAC CTTGATTAAG AAAGTGGGCG GCGGCCGAGT GGCGGCGCAT
GAGATCATGA TGGGGACGCC TGCGATTCGT AACCTTATTC GTGAGGATAA AGTCGCGCAG
ATGTATTCGG CAATTCAAAC GGGTATGGCC CACGGAATGC AGACGCTGGA CCAATGTTTA
CAGAACTTGG TTAATCGCGG CCAAATCTCC CGTGAAGATG CCATGGCTAA GAGCTCGAAT
AAACAAACCA ACTTTTAA
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| Protein sequence | MEITELLAFS VKHNASDLHL SAGVSPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR
KDYEEHLEID FSFEVPGLAR FRVNAFNQSR GSAAVFRTIP SDILSLEQLG APEIFKKISS
FPRGLVLVTG PTGSGKSTTL AAMIDYVNEN RHDHILTIED PIEFVHQNKQ CLINQREVHR
HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRI
VDVFPEGEKG MVRTMLSESL QAVISQTLIK KVGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSAIQTGMA HGMQTLDQCL QNLVNRGQIS REDAMAKSSN KQTNF
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