| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1113 |
|---|
| Symbol | |
|---|
| ID | 5661512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 1348137 |
|---|
| End bp | 1349078 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641235665 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001500975 |
|---|
| Protein GI | 157960941 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.800719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAC TTTTAGAACC AATCGCAATT TTTACCCATG TGGCTCGAGC GGGGAGTTTT
AGCTCTGCAG CGAGAAAGTT AGGCATATCA AAGTCTAAAG TCAGTACCCA AGTGGCCGAT
CTGGAGCACA AGCTTGGCGT TCAATTGATT CAACGTACAA CTAGAAGCTT GAGTTTAACC
GAGGCGGGTC AGCTACTGTA TACCCAAGGT GAAGAGTTAT TAAGAGATGC CGACCAAGCT
GTTGCTAGCG TTCATAATCT TAATGATGCT ACCCGAGGCG TATTGAAAGT TGGTATTTCT
CAGTCTTTCG GCACCATGCA TATCATTCCT GCTTTGCCAG AGTTTATGGC AAGGCATCCA
GAACTAGAGT TACAAGTTAG CCTGCTCGAC CATAAAGTCG ATGTGGTTAG CGAAGGTTTA
GATCTGCTTC TTACTATGTC AGAGCAATTG CCCCTTGGCA TGGTTGCCAG ACCCTTGATG
AAATGTCAGT TCTTGTTAGC CGCCTCTCCC TCATACGTTG CAAAACATGG CGTTCCTAGC
CGCCCAGAGC AGCTGGTGGA CCATAATTGC TTGGTTTACC AAGGTGAGTG GCATGAGCAT
AGCGTATGGC AATTTAAACA GGGTGAAGAC AACTGTGAAA TTGGCGTAAC AGGTAATTTC
AGAGTCGATA ATGCGCCAGC ACTTAAGTCT GCTGCAGTTA GTGGTTTGGG TGTGGTTTAT
CTTGCCAGTT ACCTGCTCGA AGATGAGCTT GAGAAGGGCA CTTTAGTCCC TCTTCTTGAA
GACTGGCAGT TGACTCATAA TTTACCATTG CAGGCTGTTT ACCCAAGACG TAAGCATTTA
GCACCTAAGG TGAGCGCCTT TATCGATTTT ATAAAGGATC ATATCGGTAC CCCGCCATAT
TGGGACGCCC CCTTAAAAGA CTTGTATGCA AAGCGTAAGT AA
|
|---|
| Protein sequence | MLELLEPIAI FTHVARAGSF SSAARKLGIS KSKVSTQVAD LEHKLGVQLI QRTTRSLSLT
EAGQLLYTQG EELLRDADQA VASVHNLNDA TRGVLKVGIS QSFGTMHIIP ALPEFMARHP
ELELQVSLLD HKVDVVSEGL DLLLTMSEQL PLGMVARPLM KCQFLLAASP SYVAKHGVPS
RPEQLVDHNC LVYQGEWHEH SVWQFKQGED NCEIGVTGNF RVDNAPALKS AAVSGLGVVY
LASYLLEDEL EKGTLVPLLE DWQLTHNLPL QAVYPRRKHL APKVSAFIDF IKDHIGTPPY
WDAPLKDLYA KRK
|
|---|
| |