Gene Spea_1050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_1050 
SymbolrimM 
ID5661449 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1272961 
End bp1273491 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content44% 
IMG OID641235596 
Product16S rRNA-processing protein RimM 
Protein accessionYP_001500912 
Protein GI157960878 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000145643 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAGTA AACAAGAACC CGTCATCCTT GGCAAAATCG GTTCAAGTTA TGGCATTAAA 
GGTTGGTTGA AGATCACTAC CTATACCGAC TCTGTTGAAG GTATCTTTGA CTATTCACCT
TGGCTTATTA AAGAACAAGG CGAATGGCGC GAGGTTAAGG TCGCCCAGTG GCGTTTCCAA
GGTAAAGCAG TTGTTGCTTG TCTTGAAGGC GTATCAACAC GGGATGAGGC GCAAGCGCTT
ACAAATTGTG AGATTGCGGT GCCTGCTGAT CAGATGCAAG ATTTACCAGA AGATGAATTC
TACTGGCGAG ATCTTATCGG CTGTGAAGTG ATTAATACCA AAGGCTACAA CATGGGTACA
GTTCAGGAGA TCGTGGAAAC AGGATCGAAT GACGTACTTC TAGTTAAAGC AAACGCAAAA
GATGGCTTTG GCAAAGCGGA ACGTATGATT CCCTTTGTTA CTGACCAGTT CATCCAAAAG
GTGGACTTGG CAGCAAAACA GATTTTAGTG GATTGGGATC CGGACTTTTA A
 
Protein sequence
MSSKQEPVIL GKIGSSYGIK GWLKITTYTD SVEGIFDYSP WLIKEQGEWR EVKVAQWRFQ 
GKAVVACLEG VSTRDEAQAL TNCEIAVPAD QMQDLPEDEF YWRDLIGCEV INTKGYNMGT
VQEIVETGSN DVLLVKANAK DGFGKAERMI PFVTDQFIQK VDLAAKQILV DWDPDF