Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_1050 |
Symbol | rimM |
ID | 5661449 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1272961 |
End bp | 1273491 |
Gene Length | 531 bp |
Protein Length | 176 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641235596 |
Product | 16S rRNA-processing protein RimM |
Protein accession | YP_001500912 |
Protein GI | 157960878 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0000145643 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAGTA AACAAGAACC CGTCATCCTT GGCAAAATCG GTTCAAGTTA TGGCATTAAA GGTTGGTTGA AGATCACTAC CTATACCGAC TCTGTTGAAG GTATCTTTGA CTATTCACCT TGGCTTATTA AAGAACAAGG CGAATGGCGC GAGGTTAAGG TCGCCCAGTG GCGTTTCCAA GGTAAAGCAG TTGTTGCTTG TCTTGAAGGC GTATCAACAC GGGATGAGGC GCAAGCGCTT ACAAATTGTG AGATTGCGGT GCCTGCTGAT CAGATGCAAG ATTTACCAGA AGATGAATTC TACTGGCGAG ATCTTATCGG CTGTGAAGTG ATTAATACCA AAGGCTACAA CATGGGTACA GTTCAGGAGA TCGTGGAAAC AGGATCGAAT GACGTACTTC TAGTTAAAGC AAACGCAAAA GATGGCTTTG GCAAAGCGGA ACGTATGATT CCCTTTGTTA CTGACCAGTT CATCCAAAAG GTGGACTTGG CAGCAAAACA GATTTTAGTG GATTGGGATC CGGACTTTTA A
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Protein sequence | MSSKQEPVIL GKIGSSYGIK GWLKITTYTD SVEGIFDYSP WLIKEQGEWR EVKVAQWRFQ GKAVVACLEG VSTRDEAQAL TNCEIAVPAD QMQDLPEDEF YWRDLIGCEV INTKGYNMGT VQEIVETGSN DVLLVKANAK DGFGKAERMI PFVTDQFIQK VDLAAKQILV DWDPDF
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