Gene Spea_0958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_0958 
Symbol 
ID5664687 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp1169239 
End bp1171089 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content44% 
IMG OID641235504 
ProductRNA polymerase, sigma 70 subunit, RpoD 
Protein accessionYP_001500820 
Protein GI157960786 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.23062e-07 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTTAAAT TGTTGCTCGC CAAAGGTAAA 
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT
TCTGACCAGA TTGAAGATAT TATCCAGATG ATCAATGACA TGGGTATTCG AGTCTATGAA
CAGGCTCCGG ATGCTGATGA AATCATGATG TCTGAAGACA GCACCGATGA CGATGCTGCA
GAAGAAGCCG CTGCTGCGCT TGCAACAGTT GAAGCAGAAT TAGGTCGTAC TACTGACCCA
GTGCGCATGT ACATGCGTGA AATGGGTACA GTTGAACTTC TAACACGTGA AGGCGAGATT
GTTATCGCTA AGCGTATCGA AGAAGGTATT AACACGGTTC AAGCATCTGT TGCGGAATAT
CCGCAAGCGA TTGCGATGAT CCTTGAACAA TACGATCGCT ACGAAGCTGA AGAAGTTAGA
CTTTCTGACA TCATCTCTGG ATTTGTTGAT CCAAATGCAG AAGATGTCGC GCCAACAGCT
ACTCATGTTG GTTCTGAGTT ATCTGATGAT GAATTGGATG ATGAAGATGA CGATGACGAT
GATGACGATG ACGATGACGA AGAAGAGGAA GGTCCAAAAG GTCCTGATCC TGAAGAAGCT
AAAGAGAAGT TTACAACACT TCGTCTAGCC CATGAAAATG CATTAAGAAT TATTGCAGAC
AAAGGCCGTG GTCACCCAGA GTCGACCGTA GCACTATTCG AAATTGGCGA GATCTTCAAA
GAGTTCCGTT TGATGCCTAA GCAGTTTGAC CGCTTAGTTA AGAACATGCG CTCTATGATG
GACAAAGTCC GTGTTCAAGA ACGTTTGATC ATGAAGCTTT GTGTTGAACA AGCCAAAATG
CCGAAGAAGA ACTTCGTCAA AGTTTACACT AGCAATGAAA GCAGCATCGA ATGGTTCAAC
GATGAACTTG CATCAGGCAA GCCATATGTA GAAGGTCTAC AAATGGTTGA GTTCGATGTA
CAACGTTGTC GTGCAAAGCT TGATGCAATT GAAGTTGAAA CTGGTCTAGC TATCGGTGCA
ATCAAAGATA TTAACCGTCG TATGTCAATC GGTGAAGCGA AAGCTCGTCG TGCGAAGAAA
GAGATGGTTG AAGCGAACTT ACGTCTAGTA ATCTCTATCG CTAAAAAGTA CACCAACCGT
GGTCTACAGT TCTTGGATCT AATTCAAGAA GGTAACATCG GTCTGATGAA AGCGGTAGAT
AAGTTCGAAT ACCGTCGTGG TTATAAGTTC TCTACTTATG CAACTTGGTG GATCCGTCAG
GCGATCACTC GTTCTATTGC TGACCAAGCA AGAACGATCC GTATTCCAGT GCATATGATT
GAGACTATCA ACAAGCTTAA CCGTATCTCT CGCCAAATGT TGCAAGAGAT GGGTCGTGAA
CCTTCTCCTG AAGAGTTGGC AGAGCGCATG TTAATGCCTG AAGATAAGAT CCGTAAGGTA
CTTAAGATCG CTAAAGAGCC GATCTCAATG GAAACACCAA TTGGTGACGA TGAAGATTCG
CACTTAGGTG ATTTCATCGA GGATACTACC CTCGAGCTAC CATTGGACTC TGCGACAGGC
GAAAGCTTGA AGAACGCAAC TCACGAAGTA CTAGCGGGCC TAACAGCTCG TGAAGCTAAA
GTACTGCGTA TGCGTTTCGG TATCGACATG AATACTGACC ACACTCTAGA AGAAGTGGGT
AAGCAGTTTG ACGTAACACG TGAGCGTATT CGTCAGATTG AAGCTAAAGC GCTACGTAAG
TTGCGTCACC CTTCTCGCTC TGAGATCTTA AAGTCGTTCC TAGACGAATA G
 
Protein sequence
MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVYE 
QAPDADEIMM SEDSTDDDAA EEAAAALATV EAELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQASVAEY PQAIAMILEQ YDRYEAEEVR LSDIISGFVD PNAEDVAPTA
THVGSELSDD ELDDEDDDDD DDDDDDEEEE GPKGPDPEEA KEKFTTLRLA HENALRIIAD
KGRGHPESTV ALFEIGEIFK EFRLMPKQFD RLVKNMRSMM DKVRVQERLI MKLCVEQAKM
PKKNFVKVYT SNESSIEWFN DELASGKPYV EGLQMVEFDV QRCRAKLDAI EVETGLAIGA
IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PSPEELAERM LMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATG
ESLKNATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPSRSEIL KSFLDE