| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0958 |
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| Symbol | |
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| ID | 5664687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 1169239 |
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| End bp | 1171089 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641235504 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001500820 |
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| Protein GI | 157960786 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000123062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTTAAAT TGTTGCTCGC CAAAGGTAAA
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TACCTGCAGA CATGGTCGAT
TCTGACCAGA TTGAAGATAT TATCCAGATG ATCAATGACA TGGGTATTCG AGTCTATGAA
CAGGCTCCGG ATGCTGATGA AATCATGATG TCTGAAGACA GCACCGATGA CGATGCTGCA
GAAGAAGCCG CTGCTGCGCT TGCAACAGTT GAAGCAGAAT TAGGTCGTAC TACTGACCCA
GTGCGCATGT ACATGCGTGA AATGGGTACA GTTGAACTTC TAACACGTGA AGGCGAGATT
GTTATCGCTA AGCGTATCGA AGAAGGTATT AACACGGTTC AAGCATCTGT TGCGGAATAT
CCGCAAGCGA TTGCGATGAT CCTTGAACAA TACGATCGCT ACGAAGCTGA AGAAGTTAGA
CTTTCTGACA TCATCTCTGG ATTTGTTGAT CCAAATGCAG AAGATGTCGC GCCAACAGCT
ACTCATGTTG GTTCTGAGTT ATCTGATGAT GAATTGGATG ATGAAGATGA CGATGACGAT
GATGACGATG ACGATGACGA AGAAGAGGAA GGTCCAAAAG GTCCTGATCC TGAAGAAGCT
AAAGAGAAGT TTACAACACT TCGTCTAGCC CATGAAAATG CATTAAGAAT TATTGCAGAC
AAAGGCCGTG GTCACCCAGA GTCGACCGTA GCACTATTCG AAATTGGCGA GATCTTCAAA
GAGTTCCGTT TGATGCCTAA GCAGTTTGAC CGCTTAGTTA AGAACATGCG CTCTATGATG
GACAAAGTCC GTGTTCAAGA ACGTTTGATC ATGAAGCTTT GTGTTGAACA AGCCAAAATG
CCGAAGAAGA ACTTCGTCAA AGTTTACACT AGCAATGAAA GCAGCATCGA ATGGTTCAAC
GATGAACTTG CATCAGGCAA GCCATATGTA GAAGGTCTAC AAATGGTTGA GTTCGATGTA
CAACGTTGTC GTGCAAAGCT TGATGCAATT GAAGTTGAAA CTGGTCTAGC TATCGGTGCA
ATCAAAGATA TTAACCGTCG TATGTCAATC GGTGAAGCGA AAGCTCGTCG TGCGAAGAAA
GAGATGGTTG AAGCGAACTT ACGTCTAGTA ATCTCTATCG CTAAAAAGTA CACCAACCGT
GGTCTACAGT TCTTGGATCT AATTCAAGAA GGTAACATCG GTCTGATGAA AGCGGTAGAT
AAGTTCGAAT ACCGTCGTGG TTATAAGTTC TCTACTTATG CAACTTGGTG GATCCGTCAG
GCGATCACTC GTTCTATTGC TGACCAAGCA AGAACGATCC GTATTCCAGT GCATATGATT
GAGACTATCA ACAAGCTTAA CCGTATCTCT CGCCAAATGT TGCAAGAGAT GGGTCGTGAA
CCTTCTCCTG AAGAGTTGGC AGAGCGCATG TTAATGCCTG AAGATAAGAT CCGTAAGGTA
CTTAAGATCG CTAAAGAGCC GATCTCAATG GAAACACCAA TTGGTGACGA TGAAGATTCG
CACTTAGGTG ATTTCATCGA GGATACTACC CTCGAGCTAC CATTGGACTC TGCGACAGGC
GAAAGCTTGA AGAACGCAAC TCACGAAGTA CTAGCGGGCC TAACAGCTCG TGAAGCTAAA
GTACTGCGTA TGCGTTTCGG TATCGACATG AATACTGACC ACACTCTAGA AGAAGTGGGT
AAGCAGTTTG ACGTAACACG TGAGCGTATT CGTCAGATTG AAGCTAAAGC GCTACGTAAG
TTGCGTCACC CTTCTCGCTC TGAGATCTTA AAGTCGTTCC TAGACGAATA G
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| Protein sequence | MISMDHTPQS QLKLLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVYE
QAPDADEIMM SEDSTDDDAA EEAAAALATV EAELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQASVAEY PQAIAMILEQ YDRYEAEEVR LSDIISGFVD PNAEDVAPTA
THVGSELSDD ELDDEDDDDD DDDDDDEEEE GPKGPDPEEA KEKFTTLRLA HENALRIIAD
KGRGHPESTV ALFEIGEIFK EFRLMPKQFD RLVKNMRSMM DKVRVQERLI MKLCVEQAKM
PKKNFVKVYT SNESSIEWFN DELASGKPYV EGLQMVEFDV QRCRAKLDAI EVETGLAIGA
IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PSPEELAERM LMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDTT LELPLDSATG
ESLKNATHEV LAGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPSRSEIL KSFLDE
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