Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0948 |
Symbol | |
ID | 5661347 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1156963 |
End bp | 1157868 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641235493 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001500810 |
Protein GI | 157960776 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGC CGTTAAAATT TCGATTACCC AAAGGCCAAT GTTGGACCAT AGGTGTCCCA TACTTTTGGC TACTGATGTT CTTCGCACTA CCTTTCGCTA TTGTACTTAA GATCAGTTTC TCAACCCCTA TCATCTCGAT ACCGCCTTAC GAGCCATTGT TTCAGTATGC AGAAGAATCG CTGCAGATCA TGCTCAACTT GGGCAATTAC TTGCTCATTC TCGATGATTC CTTGTACTAC AACGCTTATC TAAGTTCACT TAAGATGGCG ACTATCTCAA CCATAGGCTG TTTACTCATA GGCTATCCGA TGGCCTATGC CATTGCTCGT GCGCCTAAGC GTAACCAAAC CATGTTAATC CTGTTGGTGA TGTTACCTTC TTGGACCTCT TTCCTTATCC GGGTTTACGC CTGGATGGGC ATATTGAGCA ACAATGGTGT GATCAATAAC TTGTTGATGT GGACCGGCAT TATCTCCGAG CCTTTGCAGA TCTTAAATAC CAATACCGCG GTCTATATAG GCATTATCTA CAGCTATTTG CCGTTTATGA TCTTGCCGCT GTACGCCAAC CTGTCTCAAC TCGATGGTAG CTTGCTAGAG GCGGCTGCAG ATCTCGGTTC TCGCAGTCTC AATACTTTCT GGAAGGTGAC GCTACCGTTA TCGAAAGGCG GGGTGATTGC TGGCTCTATG TTGGTGTTTA TTCCTGTGGT AGGTGAGTTT GTGATCCCAG AGTTACTCGG TGGCCCAGAC TCATTGATGA TAGGTAAGAT TCTTTGGCAA GAGTTCTTCA ATAATCGTGA CTGGCCGGTG GCCTCCGCGC TTGCGATTGT GATGTTAGGG CTACTGATTA TCCCGATAAC CCTGTTCCAC CGCTATCAGG CTAAAGAGAT GGAGAAGACA GCATGA
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Protein sequence | MKKPLKFRLP KGQCWTIGVP YFWLLMFFAL PFAIVLKISF STPIISIPPY EPLFQYAEES LQIMLNLGNY LLILDDSLYY NAYLSSLKMA TISTIGCLLI GYPMAYAIAR APKRNQTMLI LLVMLPSWTS FLIRVYAWMG ILSNNGVINN LLMWTGIISE PLQILNTNTA VYIGIIYSYL PFMILPLYAN LSQLDGSLLE AAADLGSRSL NTFWKVTLPL SKGGVIAGSM LVFIPVVGEF VIPELLGGPD SLMIGKILWQ EFFNNRDWPV ASALAIVMLG LLIIPITLFH RYQAKEMEKT A
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