Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0946 |
Symbol | |
ID | 5661345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 1154615 |
End bp | 1155715 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641235491 |
Product | extracellular solute-binding protein |
Protein accession | YP_001500808 |
Protein GI | 157960774 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAACTTT TTAAAAAGGC GACCACACTT GCCCTCGTCA CCGCAAGTGT AATGGCTTCG ACTACCGCAT ACGCTGAGGA AGTTGTTCGA GTTTATAACT GGTCAGATTA TATTGCCGAA GATACCTTAG AGAACTTCCA CAAAGAGACT GGCATCCGTG TTGTTTATGA TGTGTTTGAC AGTAATGAAG TGGTTGAAGC TAAGCTACTT TCAGGTCGCT CTGGTTACGA TATCGTTGTT CCATCTAATA GTTTTCTCGC TAAGCAAATT AAAGCGGGTG CCTTCCAGAA GTTAGATTCT AATCAACTAC CAAATCATAA GAATTTAAGC CCAGAGCTAA TGACTCAGTT AGAGTCAGCC GATCCGGGTA ATCAATACTC TGTACCATAC CTTTGGGGAA CCAATGGTAT CGGTTATAAC GTCGAAAAAG TTAAAGCTGT ACTGGGGGAA GATGCGCCTG TTGATTCTTT AGAGCTTATC TTCAACCCTA AGTATGCCGA GAAGGTGTCT CAGTGTGGAT TGTCTTTGCT TGATAGTGCC GATGAGATGA TCCCGATGGC GCTTATCTAT CTTGGGCTGG ATCCAAACAG CACTAAAGCG GATGACTTTA AGAAGGCCGG TGAAGTGCTT GCTAAGGTGC GCCCTTATAT CACTTACTTC CACTCATCAC GTTATATCAC TGACTTAGCG AATGGCGATA TCTGTGTGGC ATTTGGTTAT TCTGGCGATA TTTTCCAGGC TGCGGATCGC GCCGATGAAG CTGAAAATGG TAATACCATC GAATATTCAA TCCCTAAAGA GGGCTCAAAC CTTTGGTTTG ATATGTTAGC CATTCCTGCT GATGCGGCTA ACGTTAAAAA CGCTCACACC TTTATCAATT ATCTGCTGCG CCCAGAGGTG ATTGCGCCTA TCACTAACTA TGTGGCTTAT GCGAACCCGA ACGTGCCAGC GTTGCCGTTA GTGGATGAAG ATGTGCGTAC TAACACTTCT ATCTACCCAA CTAAAGAGGT GTTAGATCGT TTATATGTTG GCGATGTGCG TCCAATGAAA TCACAGCGTT CATTAACGCG AGTTTGGACC AAAGTGAAAT CAGGCTACTA A
|
Protein sequence | MKLFKKATTL ALVTASVMAS TTAYAEEVVR VYNWSDYIAE DTLENFHKET GIRVVYDVFD SNEVVEAKLL SGRSGYDIVV PSNSFLAKQI KAGAFQKLDS NQLPNHKNLS PELMTQLESA DPGNQYSVPY LWGTNGIGYN VEKVKAVLGE DAPVDSLELI FNPKYAEKVS QCGLSLLDSA DEMIPMALIY LGLDPNSTKA DDFKKAGEVL AKVRPYITYF HSSRYITDLA NGDICVAFGY SGDIFQAADR ADEAENGNTI EYSIPKEGSN LWFDMLAIPA DAANVKNAHT FINYLLRPEV IAPITNYVAY ANPNVPALPL VDEDVRTNTS IYPTKEVLDR LYVGDVRPMK SQRSLTRVWT KVKSGY
|
| |