| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0873 |
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| Symbol | |
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| ID | 5661272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 1072069 |
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| End bp | 1073205 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641235418 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001500735 |
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| Protein GI | 157960701 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000517081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTAC TACTCGTATT GACCTATACC GCTATCTGCA TTGCGATTTT CAAGATATTT
AAGATCCCAC TGACCAAGTG GACGGTACCG ACCGCCATAC TCGGCGGCAT ATTTATCGTC
GGTGCCTTGA TCTTACTGAT GAACTATAAC CACCCTTATA CGCCATTTGC GAAAGAGTAT
TTCGTTACCA CCCCAATTAA TCCCGCGGTT CGGGGCGTAG TTGTATCGGT AGAGGTTGAG
CCTAATACTC CGATTAAGAA GGGAGACGTG TTATTTAGGA TCGACCCAAC CCCCTTTCAA
GCGATTGTGA AGCAAAAGCG TGCAGCGTTA GTTGCGGCCG AGCTTGAAGT ACCACAGCTA
GAGGCCGCGT GGGAAACCGC AAGAGCATCG GTCACAAGGG CGACCGCTGA TAGAGATAGA
ACTAAATCGG CATTCGATCG TTATGAAAAA GGACGTAAGC GCGGTGGGGT TAACTCACCC
TTTACAGAGC TTGAGCTCGA TAACAAACGT CAGCTTTATT TTGCATCTGA AGCACAATTA
ACCGCTGCTA ACGCAGAGGA GTTAAGGGTT CGTTTAGCTT ATGAGTCAAA CGTCGATGGC
GTTAATACCA AGGTCGCAGG CATTCAAGGT GAGCTTGAAA AAGCGCAGTT CGAACTTGAG
CAGACTGTGG TCAAGGCTCC TGCCGATGGC ATGGTGACCC AGATGGCACT CCGCCCGGGT
ATTGTGGCTG TGCCTATGCC ATTAAGACCC TTACTAAGCT TTATTCCTGA TGAAGAGCGG
GCTTTTGTGG GGGCATTTTG GCAGAACTCA TTACTCAGAT TAAAAGAAGG GGATGAAGCT
GAGGTAATTT TAGATGGTGC GCCGGGGCAA GTATTTAAAG GTAGAGTGGC TAAAGTCTTA
CCAGCCATGG CCGAAGGTGA GATCCAGTCA TCAGGTTCTT TGATTTCATC GAATCGTTTA
ATGACACGAG GCAGAGCCTT AGTACTGATT AAACTTGAAG ATCATGAAGT TCGAACGCGC
TTCCCAGCGG GTGTTTCGGG TCATGCGGCT ATCTACACCG AGCACTTTGC TCATGTATCA
GTGATGCGAC GAGTCTTATT AAGAATGCAG GGCTGGCTAA ACTACCTATT CCACTAA
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| Protein sequence | MDLLLVLTYT AICIAIFKIF KIPLTKWTVP TAILGGIFIV GALILLMNYN HPYTPFAKEY
FVTTPINPAV RGVVVSVEVE PNTPIKKGDV LFRIDPTPFQ AIVKQKRAAL VAAELEVPQL
EAAWETARAS VTRATADRDR TKSAFDRYEK GRKRGGVNSP FTELELDNKR QLYFASEAQL
TAANAEELRV RLAYESNVDG VNTKVAGIQG ELEKAQFELE QTVVKAPADG MVTQMALRPG
IVAVPMPLRP LLSFIPDEER AFVGAFWQNS LLRLKEGDEA EVILDGAPGQ VFKGRVAKVL
PAMAEGEIQS SGSLISSNRL MTRGRALVLI KLEDHEVRTR FPAGVSGHAA IYTEHFAHVS
VMRRVLLRMQ GWLNYLFH
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