| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0825 |
|---|
| Symbol | |
|---|
| ID | 5661224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | - |
|---|
| Start bp | 1024364 |
|---|
| End bp | 1025731 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641235370 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001500687 |
|---|
| Protein GI | 157960653 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3014] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.692927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGCT TACTACTGCT AGCAACTATG ATGCTTAGCC TTAGTGGCTG CGCGTTTAAC
AGTATCTTTA TTAATTACCC GTCTCAAATT TCCCCCGTTA AGGCTCAGCT AAATTCTCCG
ACCCCACAAA ATGCAGCAAA CATTGTTGAA TCAAAAATTG ATGGAGCCGA TGGCTTACTC
TACGCACAAG AGGCTGGGAG AAGTGCACAG ATTGCCGGTA ACTTCGAAGC CAGTAAACAA
TACTATCAGC AAGCAGTATC TGCCTATGTC GCATTCGATG ACAAGGCCAA GCTTAGCCTA
AGCGACGCAG GCGCCACTGC CAGTAGCCTT TTCGTCAACG ATAACGTTAT CCCCTATCGC
GGCCCAGGTT ATGAGCGCAT CATGCTGCAT CAGTATCAGG CTCTTAACTA TCTGTTCGCT
GGCGACGCCC AAGGTGCATT AGTGGAAGTG CGCCGTAGTA ATGAGTTACA AAGCCAAGAA
CAAGCGCGAT ATCAAAAATC CAATAAATCA GTACAAGCCA TGGCAAACGG CACCATAGAC
GCCGAGATGA ATAAGCTTAG TAAGGCAGCG GGCACAACCA CCAGCTCCTT TTTGAACGCC
TATAGCTACT ACACTACCGG GATGTTGCAC GAGATTTTAG GCGAGCCTAA CGACGCCTTT
ATCGATTATC GCAAGGCCGC ACAGATCACC CCTAATAATC CCTATCTGCA GCAAGATCTA
GTCAGACTCG CAAAGCAGCT TTCTATGCCG CAGTACGATG AGTTTAAGCG GCGCTGGGGC
GATGCAGTAT TGCCAAAGAA AGGCGATGGC CAAGTCATCG TTATGCTTGA GCGCGGCTTT
GTACCAGAGA AACAGAGTTT CACCGTACCT TTTACCATTC ACGGCAATTG GCAAACGGCT
TCATTAGCAA CCTATTACCC TAATAGACAG CCCGTCAAAC AGGCACAAAT TCAAGGCTTA
GGTACTGTAC TAAAAACCGC CCCCCTAGCC AATATCGATG CCTTAGCCAT TACCGCCCTC
AAAGAAGAGC TTCCTGCGGC GCTCGTTAGA CAAGCCGCGC GGATCTATGC AAAATCTGAA
ATGGCACGCA GCGTCGAGAG TGACACCAAG AAACGTAACA ATGACATAGA TTACGCCTCT
ATAGCCATGC AGATCTTTAA CGTGGTCAGC GAGCAAGCCG ATAGACGCAG CTGGTTAACC
TTGCCTGAAC AGGCACAGCT CGCTCGCTCA TATGTAAAAC CTGGGCATTA TTCACTCATG
CTAGACAACA ATCCAGCCGA TCCCATTGAA GTAAAAAGCG GACGTACAAC CTTAGTCTGG
GTAATTGACA CTGGTAATTA CACCCGTTTT TATTCAATAA TCATTTAG
|
|---|
| Protein sequence | MRSLLLLATM MLSLSGCAFN SIFINYPSQI SPVKAQLNSP TPQNAANIVE SKIDGADGLL
YAQEAGRSAQ IAGNFEASKQ YYQQAVSAYV AFDDKAKLSL SDAGATASSL FVNDNVIPYR
GPGYERIMLH QYQALNYLFA GDAQGALVEV RRSNELQSQE QARYQKSNKS VQAMANGTID
AEMNKLSKAA GTTTSSFLNA YSYYTTGMLH EILGEPNDAF IDYRKAAQIT PNNPYLQQDL
VRLAKQLSMP QYDEFKRRWG DAVLPKKGDG QVIVMLERGF VPEKQSFTVP FTIHGNWQTA
SLATYYPNRQ PVKQAQIQGL GTVLKTAPLA NIDALAITAL KEELPAALVR QAARIYAKSE
MARSVESDTK KRNNDIDYAS IAMQIFNVVS EQADRRSWLT LPEQAQLARS YVKPGHYSLM
LDNNPADPIE VKSGRTTLVW VIDTGNYTRF YSIII
|
|---|
| |