| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0701 |
|---|
| Symbol | |
|---|
| ID | 5661100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 861751 |
|---|
| End bp | 862677 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641235246 |
|---|
| Product | transcriptional regulator, CadC |
|---|
| Protein accession | YP_001500563 |
|---|
| Protein GI | 157960529 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3710] DNA-binding winged-HTH domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTAA GTTTTAGTGA ATTCTCCATA GATAGTGAAA CATTAGAACT GAACGTAGAT
GGGCATTGTC TCGCTATCGA TGAGCGAAAT ATGACTCTGT TGGCCATGTT GGCAGAGCGC
TACCCAGATT ATTGTACTAA GCAGGAGTGC TTAGCGCTCA TCTGGCAGGA GACCATCGTC
TCAGATATGT CATTATCTAA GTTGGTGTCA GATACCCGTA AACTTTTCTG TAAGGCGGGT
TATCAGGGGC CCCTTATCCA GACCGTTCAT GGTCGCGGCT ACCGTCTAGA GCATCAACTT
GGTAAACAGC TTCTTGCCCA AGCGGATAAA AATGATGATG TTATTGAACC GATAAAGATG
CAAGCACCTG AACAAGTCAT TGATAGTTGC CAAGACAAGA AAGCACCCCA ACAACTCGTT
AGTCAGCCTT CAGGTTGGGA GCTCCTAGCT AAGGCATTAA TCGCATTGCT GCTGATATTA
GGGCTTTTTT TTCAGTTCTG GCAGGGGGGA GTCTCAAGTT CAGATCCTAT GAGGCAATTG
GCCTACAGTG AACCTCATAA TGCCGTCGGT CGCGTATTGT GGGTCGATGA TCACCCCGAA
AATAATTTAG TCGAAAAAGC CTATTTAGAG CAGAAGAACA TAGGTGTCTA TAACACGGTA
ACCTCGGAAG AGGCCTTGAT GTTGCTCTCC ATGTATCACT ATCAAGCCGT GATCTCCGAT
ATGGGGCGCC ATGGAGATTC ATTGGCAGGG CTGAAGTTAT TACAGGCAAT TCGGGCTAAG
GGGAATAAGA CGCCGTTTTA CCTCTATACC TATGTGGAGT CACCGGGGCT CGTAGATGCC
GTTTATGAGA GCGGTGGTCA AGCCGTTGTG ATCGACTCTG AGTCTCTTTA TCAATTACTG
CTAAGCCATT TTGAAGCCGA AAATTAG
|
|---|
| Protein sequence | MLLSFSEFSI DSETLELNVD GHCLAIDERN MTLLAMLAER YPDYCTKQEC LALIWQETIV
SDMSLSKLVS DTRKLFCKAG YQGPLIQTVH GRGYRLEHQL GKQLLAQADK NDDVIEPIKM
QAPEQVIDSC QDKKAPQQLV SQPSGWELLA KALIALLLIL GLFFQFWQGG VSSSDPMRQL
AYSEPHNAVG RVLWVDDHPE NNLVEKAYLE QKNIGVYNTV TSEEALMLLS MYHYQAVISD
MGRHGDSLAG LKLLQAIRAK GNKTPFYLYT YVESPGLVDA VYESGGQAVV IDSESLYQLL
LSHFEAEN
|
|---|
| |