Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0427 |
Symbol | hemE |
ID | 5660827 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 530134 |
End bp | 531198 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641234964 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_001500290 |
Protein GI | 157960256 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAGAAT TAAAGAATGA TCGTTATTTA CGTGCGTTAT TAAAACAGCC TGTCGATAGA ACTCCTGTCT GGATGATGCG TCAAGCTGGC CGTTATCTTC CAGAATATAA AGCAACCCGC GCAGAAGCTG GCGACTTCAT GTCTCTTTGT AAGAACCAAG ACTTAGCTTG TGAAGTGACT CTTCAACCTC TACGTCGCTA CGATTTAGAT GCAGCAATCC TGTTCTCTGA TATTTTAACT GTTCCTGATG CGATGGGCTT AGGTCTGTAC TTTGAAGCTG GTGAAGGTCC ACGTTTCGAA CGTCCAACCG ATACCATCGA TTCAATTAAA AAGCTTTGCA TTCCAGATCC AGAAGATGAA CTTGGTTATG TAATGCGTGC AGTAAGCACT ATTCGTCGTG AACTTAAAGG TGAAGTGCCA CTAATCGGTT TCTCAGGTTC ACCTTGGACA CTCGCGACTT ACATGGTTGA AGGTGGTTCA AGCAAGGCAT TCGAAAAGAT TAAGAAGATG GCTTACGAAG AGCCAGCTAC TCTGCACATG CTGCTAGATA AGCTAGCTGA CTCTGTCACT TTGTACCTAA ATGCTCAAGT TGCAAACGGT GCTCAGTCAC TAATGATTTT CGATTCATGG GGTGGTGCAC TTTCTCACCA CGCATACCGT GAATTCTCAC TACGTTACAT GCAAAAAATC GTTGATGGCC TAACTCGCCA TGCAGACGGT CGCCAAGTAC CAGTGACTCT GTTCACTAAA GGTGGCGGAC TATGGCTTGA GTCTATGGCT GAAACAGGTT GTGATGCACT AGGTCTAGAC TGGACTGTTG ATATCGGTGA CGCACGTCGC CGTGTAGGTC ATAAAGTTGC TCTACAAGGT AACATGGACC CATCGGTACT TTACGGTACA CCAGAGCGTA TTCACCAAGA AGTGGATCAA ATCCTTGCTT CTTATGGAGA AGGCACTGGC CATGTATTTA ACTTGGGTCA TGGTATTCAC CAGCACGTTG ATCCAGAGCG CGCTGGCTCG TTTATCAACT CAGTTCATGA GTTATCGCCT CAGTATCACA AGTAA
|
Protein sequence | MAELKNDRYL RALLKQPVDR TPVWMMRQAG RYLPEYKATR AEAGDFMSLC KNQDLACEVT LQPLRRYDLD AAILFSDILT VPDAMGLGLY FEAGEGPRFE RPTDTIDSIK KLCIPDPEDE LGYVMRAVST IRRELKGEVP LIGFSGSPWT LATYMVEGGS SKAFEKIKKM AYEEPATLHM LLDKLADSVT LYLNAQVANG AQSLMIFDSW GGALSHHAYR EFSLRYMQKI VDGLTRHADG RQVPVTLFTK GGGLWLESMA ETGCDALGLD WTVDIGDARR RVGHKVALQG NMDPSVLYGT PERIHQEVDQ ILASYGEGTG HVFNLGHGIH QHVDPERAGS FINSVHELSP QYHK
|
| |