| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0419 |
|---|
| Symbol | aceE |
|---|
| ID | 5660819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 512019 |
|---|
| End bp | 514679 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641234956 |
|---|
| Product | pyruvate dehydrogenase subunit E1 |
|---|
| Protein accession | YP_001500282 |
|---|
| Protein GI | 157960248 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAC ATATGCTAAA TGACATCGAT CCACTAGAAA CTAATGAGTG GTTGTCTGCT
CTAGAATCAG TTGTACGCGA AGAAGGCGTT GAGCGCGCTC AATACCTACT TGAGCAAGTA
CTTGATAAGG CTCGTCTAGA CGGTGTCGAT ATGGCAACGG GGATTACGAC CAACTATATC
AACACCATTC CTACGAGCCA AGAGCCAGCA TATCCTGGTA ATACAACTAT TGAGCGCCGT
ATTCGTTCAA TTATTCGTTG GAACGCAATC ATGATCGTCC TACGTGCATC TAAGAAAGAC
TTAGATCTCG GTGGTCATAT GGCGTCTTAC CAATCTGCTG CATCATTTTA TGAAATGTGT
TTTAACCATT TCTTCCGTGC ACCAAACGAA GTAGATGGTG GTGATTTAGT TTACTATCAG
GGTCATATAT CTCCAGGTAT CTACTCGCGC GCATTTCTTG AAGGTCGTTT AACTGCCGAT
CAGTTAGATA ACTTCCGTCA AGAAGTTGAT GGTAAAGGTA TTCCTTCATA CCCACATCCA
AAGTTAATGC CTGAGTTCTG GCAGTTCCCG ACTGTATCTA TGGGTCTAGG CCCAATGTCT
GCTATTTACC AAGCCCGTTT CCTTAAGTAC CTAGATGGCC GTGGTCTAAA AGATACCTCT
GCACAGCGAG TATACGCCTT CTTAGGTGAC GGTGAGATGG ATGAGCCAGA ATCTCGCGGT
GCTATCTCTT TCGCATCACG TGAAAAGCTA GATAACCTAT GTTTCTTGAT TAACTGTAAC
CTACAGCGTC TTGATGGCCC AGTTATGGGT AACGGTAAGA TCATTCAAGA GCTTGAAGGT
CTATTTAGAG GCGCTGGCTG GAACGTAGTT AAAGTGATCT GGGGCAATAA CTGGGATGCA
CTGATTGCCA AAGATACTAC TGGTAAGCTG CTACAGCTTA TGAACGAAAC CATTGACGGT
GACTACCAGA CATTTAAGTC CAAAGATGGC GCTTATGTAC GTGAGCACTT CTTTGGTAAG
TACCCAGAAA CAGCTGCACT TGTATCTGAT ATGACAGATG CAGAGATCTT CGCGCTTAAG
CGCGGTGGTC ATGAGCCTTC TAAATTGTTT GCAGCATTTA AAAATGCGCA AGAAACTAAA
GGCAAGCCAA CAGTTATCTT AGCTAAAACT GTAAAAGGTT ATGGCATGGG CGATGCTGCT
GAAGGCAAGA ACATCGCTCA CGGCGTGAAG AAGATGGATA TGACCCATGT ACTTCAGTTG
CGTAACCGTC TTGGTCTTGG CGACTTGCTT AGCGATGAAA AAGTGTCAGA GTTGCCTTAC
CTAACGCTTG AAGAAGGTTC TGAAGAGTAC AAGTATTTGC ACGCTCGTCG TGATGCGCTA
CATGGTTATA CACCACAGCG TCTACCTAAC TTTACTCAGC CACTTGAACT ACCAGTTGTT
GAAGAGTTCA GTTCTTTGCT TGTTGAGCAA AAGCGTGAAA TCTCAACCAC TATGGCATTT
GTTCGTACCC TGAACATCCT GCTTAAGAAC AAAGGCATTG GTAAGAACAT CGTTCCTATT
ATTGCTGACG AAGCACGTAC TTTCGGTATG GAAGGTCTGT TCCGTCAAAT TGGTATTTAC
AACCCGCATG GTCAGGAATA CACGCCTGAA GATCGCAGTG TTGTGTCGTA CTATAAAGAA
GCGACTTCTG GTCAAGTATT GCAGGAAGGT ATCAACGAGT TAGGTGCTAT GTCTTCATGG
GTTGCTGCGG CAACGTCATA CAGCACTAAC GATCTACCTA TGATCCCGTT CTACATCTAC
TACTCTATGT TTGGTTTCCA ACGTGTTGGC GACATGGCAT GGATGGCGGG TGATCAGCAA
GCACGTGGTT TCCTATTAGG TGCTACTGCT GGTCGTACAA CGCTAAACGG TGAAGGTCTG
CAGCACGAAG ATGGCCACAG CCATGTTCAA GCTAACACGA TTCCAAACTG TATCTCTTAC
GACCCAACAT TCGCGTACGA GCTAGCGGTT ATCATGCAAG ACGGTATCCG TCGTATGTAT
GGCGAGCAAG AGAACGTGTT CTATTACTTG ACGCTAATGA ATGAAAACTA CGCAATGCCT
GCAATGCCAG AAGGCAGCGA AGAAGGTATC CGTAAGGGTA TTTATAAGCT TGAGTCGTAC
AAAGGTAGCA ACAAGGTTCA GTTAATGAGC TCTGGTACTA TCATGAACGA AGTGCGTAAA
GCTGCGCAAA TTCTAAGTGA AGAGTACGAC GTTGCATCAG ATGTTTACTC TGTGACTTCA
TTCAACGAGC TAACTCGTGA AGGTCAAGAT GTTGAGCGTT TCAACATGCT GCACCCAGAA
GCAGAGCAAA AGACTGCGTA CATTACTCAA GTAATGGGCA CTGAACCTGC AATTGCTGCA
ACCGATTACA TGAAGAACTA TGCTGAACAA GTTCGTGCAT TTATGCCTTC TGAATCATTC
AAAGTGCTAG GTACAGACGG TTTTGGTCGT TCAGACAGCC GTGAAAATCT ACGTCGTCAC
TTTGAAGTAA ATGCTGGTTA CGTTGTAGTA GCTGCACTAA ACGAACTCGC AAAACGTGGC
GATATTGAAA AGTCAGTGGT TGCAGCAGCA ATTACTAAAT TCAACATCGA CGCTGACAAG
ACAAACCCGC TATACGCGTA A
|
|---|
| Protein sequence | MSEHMLNDID PLETNEWLSA LESVVREEGV ERAQYLLEQV LDKARLDGVD MATGITTNYI
NTIPTSQEPA YPGNTTIERR IRSIIRWNAI MIVLRASKKD LDLGGHMASY QSAASFYEMC
FNHFFRAPNE VDGGDLVYYQ GHISPGIYSR AFLEGRLTAD QLDNFRQEVD GKGIPSYPHP
KLMPEFWQFP TVSMGLGPMS AIYQARFLKY LDGRGLKDTS AQRVYAFLGD GEMDEPESRG
AISFASREKL DNLCFLINCN LQRLDGPVMG NGKIIQELEG LFRGAGWNVV KVIWGNNWDA
LIAKDTTGKL LQLMNETIDG DYQTFKSKDG AYVREHFFGK YPETAALVSD MTDAEIFALK
RGGHEPSKLF AAFKNAQETK GKPTVILAKT VKGYGMGDAA EGKNIAHGVK KMDMTHVLQL
RNRLGLGDLL SDEKVSELPY LTLEEGSEEY KYLHARRDAL HGYTPQRLPN FTQPLELPVV
EEFSSLLVEQ KREISTTMAF VRTLNILLKN KGIGKNIVPI IADEARTFGM EGLFRQIGIY
NPHGQEYTPE DRSVVSYYKE ATSGQVLQEG INELGAMSSW VAAATSYSTN DLPMIPFYIY
YSMFGFQRVG DMAWMAGDQQ ARGFLLGATA GRTTLNGEGL QHEDGHSHVQ ANTIPNCISY
DPTFAYELAV IMQDGIRRMY GEQENVFYYL TLMNENYAMP AMPEGSEEGI RKGIYKLESY
KGSNKVQLMS SGTIMNEVRK AAQILSEEYD VASDVYSVTS FNELTREGQD VERFNMLHPE
AEQKTAYITQ VMGTEPAIAA TDYMKNYAEQ VRAFMPSESF KVLGTDGFGR SDSRENLRRH
FEVNAGYVVV AALNELAKRG DIEKSVVAAA ITKFNIDADK TNPLYA
|
|---|
| |