| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0366 |
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| Symbol | |
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| ID | 5660766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 422248 |
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| End bp | 423630 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641234900 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001500229 |
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| Protein GI | 157960195 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAC ACTTAACCAC GCATGAATTA GAGATGGTCG ATGACGTCTA CGGCGCAATG
ATGACCGATG CCCCAACCAG CCATAGACTC ATTATCTGGG CACTTGCCGC CTTAGCAGTG
ACATTTTTAG TTTGGGCGTA TTTTGCTGAG CTTGACCAAG TAACCACTGG AATGGGCAAG
GTCATCCCCT CATCACAAGT GCAAGTTATT CAAAGTTTAG ATGGCGGTAT TTTACAAGAG
ATGTACGTCC AAGAAGGCTT GATTGTGACT AAAGGCCAAC CTCTAGTTCG CATCGATGCA
ACTCGTTTTC AGTCTGACTT TGCTCAACAA GAGCAAGAGG TCAACAGCCT AGTCGCCAAT
GTCGTTCGCT TACAAGCTGA GCTCAATAGC ATTACCATCT CAGGGATCAC TAACGACTGG
CGCGAGCAAG TCAAGATATC TCCTCAGCCA TTAATATTTC CTGCAGCTCT CGAAGAGGGC
GACCCTAAAC TCACGAATCG CCAACGTGAA GAATATACCG GTCGATTAGA TAACTTAAGT
AATCAACTCG AGATCCAGGC AAGACAGATC CAGCAGCGTA ACCAAGAGAT CCAAGAGCTC
GCTTCCAAAA TTAGAACGCT AACGACGAGC TTCCAACTAG TATCTCGAGA GCTTGAATTG
ACTCGTCCAC TGGCAGAAAA AGGCATTGTT CCCGAAGTTG AGCTACTCAA ATTGCAACGA
GTGGTAAACG ATATTCAAGG AGAGCTGGCC TCACTTCGCC TACTCAGGCC AAAGGTGAAG
TCCACCATGG ATGAGGCCAT TCTAAAACGC CGAGAGTCGG TATTGATTTA TGCCGCAGAC
AGCCGCGCTC AACTTAACGA AATGCAGACT AAATTATCAC GCATGAACGA AGCTCAAGTC
GGAGCTCAAG ATAAGGTCAG TAAGGCTGAA ATAGTATCCC CTGTGAACGG CACGGTAAAA
ACTATCCATA TCAATACTCT TGGTGGCGTA GTTCAACCTG GTGTCGACAT AATTGAAATC
GTACCGTCAG AAGACAAGCT ATTAATTGAG ACGAAGATTA TCCCTAAAGA TATCGCCTTC
TTGCACCCAG GATTACCCGC CGTAGTAAAA GTCACAGCCT ATGACTTTAC TCGCTATGGT
GGCTTGAATG GCGTGGTTGA GCACATTAGT GCCGATACAA CTCAAGACGA AGAAGGCAAC
AGCTTCTACA TAGTAAAGGT GAGAACCGAG TTTTCTAGTC TAACAAAAGA CGATGGAACT
CAAATGCCTA TCATCCCGGG GATGCTTACC TCGGTGGATG TGATTACTGG GCAAAGGTCC
GTTTTAGAGT ACATACTTAA TCCGATATTG CGGGCTAAAG ATACGGCGCT TAGAGAGCGC
TAA
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| Protein sequence | MSKHLTTHEL EMVDDVYGAM MTDAPTSHRL IIWALAALAV TFLVWAYFAE LDQVTTGMGK
VIPSSQVQVI QSLDGGILQE MYVQEGLIVT KGQPLVRIDA TRFQSDFAQQ EQEVNSLVAN
VVRLQAELNS ITISGITNDW REQVKISPQP LIFPAALEEG DPKLTNRQRE EYTGRLDNLS
NQLEIQARQI QQRNQEIQEL ASKIRTLTTS FQLVSRELEL TRPLAEKGIV PEVELLKLQR
VVNDIQGELA SLRLLRPKVK STMDEAILKR RESVLIYAAD SRAQLNEMQT KLSRMNEAQV
GAQDKVSKAE IVSPVNGTVK TIHINTLGGV VQPGVDIIEI VPSEDKLLIE TKIIPKDIAF
LHPGLPAVVK VTAYDFTRYG GLNGVVEHIS ADTTQDEEGN SFYIVKVRTE FSSLTKDDGT
QMPIIPGMLT SVDVITGQRS VLEYILNPIL RAKDTALRER
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