| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0365 |
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| Symbol | |
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| ID | 5660765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 420786 |
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| End bp | 422213 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641234899 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001500228 |
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| Protein GI | 157960194 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAGCA GCACAGTACG GCAGCTAAAG CGCAGTGCAT TAGCACTTGC CGTTAGCGCG
CTGATGATAC CAGCTACAGT TTCTAGCCAA ACGCTAGAGC AAGCTGTAGC ACACACACTG
GATACAAATC CCGAAATCCG GATTGCATTT AACCGCTTTA AGGCTCGTGA AGAGCAGGTA
AATCAAGCGG TAGCGGGCTA TATGCCAACG GTTGATATCA GTGCTGGCTA TGGTTGGGAG
CAGACTAACA GCCCATCGAC TCGTCGACGT GCTCCTAATG GTGTTGGCCA AGGCGACGTT
GATGATGATG GCGTGATAGA ACTAGAACGT GGTGAGGCGG GTTTTAGTAT CAAACAGATG
CTTTTCGATG GTTTCCACAC TAGCAGCGAA GTCGACAGAT ACAGCTTCGA AGCCAGCGCC
GAACAGTGGG CATTATTTGC CGCCGCCGAA GATATGGCGC TAGATGTTGC AAAAGTTTAC
ATCAATTATA TTCGCAGTGA ACAGGTTCTC ACCTTGGCAG AGAAGAATCT TCAAAGTCAT
AAAGATATCT ACGAGCAAAT TAAGCAGCGT ACCGACTCAG GCCTAGGCTC TACTGCCGAT
CTTTCGCAAA TTACCGGTCG TTTAGCGCGT GCTAACGCCA ATGTAATCTC CGCACGCAAT
AACTTCTACG ATGCCAAATC TCAATTTGTT CGCATCGTTG AGCAACAACC AGAAGACATG
ATAGTGCCAG TGCCTGACGC AGACATGCTT CCAGCCGATC TCAGCAGTAG CGTCATGATG
GCCCAAGATA ACCATCCGAT TCTTAAATCA GCCGCGAGCG ACATCTACGC CGCCGAGAAT
GAGAAAGACT CGGCGCAATC CAATTATTAT CCAAAGGTTA CCTTAGAGCT AGATGGTAAC
TGGAATAATA ACCTCGATGG TGAAGATGGT TATTCCGCTT TGGCGAGTAA TAATGTTGGT
GGCCATAATA ATGATCTAGT TGCTATGGTG CGCTTAAAGT ACAACCTATT TGCCGGTGGT
CGCGATCTGG CTCGTGAAAA AGAAGCCGCC TATAAAGTTG GCGAAGCTAA AGAGATCCGT
CAACGTGCCC ACAGACAGGT TGTTGAAGGC GTCAACTTAG CTTGGAACGC CTACGAGCTT
CTCACTCCGC AAAAAATGTA CATTCGCGAC CATGTTGTTG CAGCTAAAGA TACCCAAGTT
GCCTATAGCC AGCAGTTCAA TTTAGGTCAG CGTACCCTAC TGGATCTACT CGATACTGAA
AATGAGCTTT TTGAAGCCAG AAAAGATTAT TTAGAGTCTG AGTATGATGA AATTATCGCT
CAATACCGCG TATTAAATGC CACCGGGCAA CTGCTCGATT CACTGCGCGT GACTAGACCC
GATGTCTGGA ATGGAGAGAG AGATTACGAA GGAGGAGTCC CACAATGA
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| Protein sequence | MDSSTVRQLK RSALALAVSA LMIPATVSSQ TLEQAVAHTL DTNPEIRIAF NRFKAREEQV
NQAVAGYMPT VDISAGYGWE QTNSPSTRRR APNGVGQGDV DDDGVIELER GEAGFSIKQM
LFDGFHTSSE VDRYSFEASA EQWALFAAAE DMALDVAKVY INYIRSEQVL TLAEKNLQSH
KDIYEQIKQR TDSGLGSTAD LSQITGRLAR ANANVISARN NFYDAKSQFV RIVEQQPEDM
IVPVPDADML PADLSSSVMM AQDNHPILKS AASDIYAAEN EKDSAQSNYY PKVTLELDGN
WNNNLDGEDG YSALASNNVG GHNNDLVAMV RLKYNLFAGG RDLAREKEAA YKVGEAKEIR
QRAHRQVVEG VNLAWNAYEL LTPQKMYIRD HVVAAKDTQV AYSQQFNLGQ RTLLDLLDTE
NELFEARKDY LESEYDEIIA QYRVLNATGQ LLDSLRVTRP DVWNGERDYE GGVPQ
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