| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0208 |
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| Symbol | rpsD |
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| ID | 5660608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 221973 |
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| End bp | 222593 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641234729 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001500071 |
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| Protein GI | 157960037 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000624869 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ACTTGGGTCC AAAGCTCAAG CTCAGCCGCA GAGAAGGTAC AGACCTTTTC
CTAAAAAGCG GCGTGAGAGC AATCGATTCG AAGTGTAAGC TTGAAACTGC ACCTGGACAA
CACGGCGCTC GTAAGACCCG TTTGTCTGAG TATGGTGTTC AGCTACGCGA GAAACAAAAA
GTTCGTCGTA TTTATGGTGT GCTAGAAAAG CAATTCCGTA ACTACTACAA AGATGCTGCA
CGTACTAAAG GTAACACTGG TGAAAACCTA CTTACTCTTT TAGAAACCCG TCTAGATAAC
GTTGTTTATC GCATGGGCTT TGGTGCAACA CGCGCTGAAT CACGTCAGCT AGTTAGCCAT
AAGTCAATTA TGGTTAATGG TAGCGTCGTT AACATTCCAT CATTCAAAGT GTCTGCGAAT
GATGTAGTGA GCGTTCGTGA AAAGTCACGC ACTCAAGCTC GTATTAAAGC GGCTTTAGAA
GTGTCGGCTC AACGCGAAAA GCCAACATGG GTTGAAGTTG ACAACACTAA GATGGAAGGT
GCTTTCAAGC GTATTCCTGA GCGTAGTGAT TTGTCTGCGG AAATTAACGA ACAGCTGATC
GTCGAACTTT ACTCTAAGTA A
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKTRLSE YGVQLREKQK
VRRIYGVLEK QFRNYYKDAA RTKGNTGENL LTLLETRLDN VVYRMGFGAT RAESRQLVSH
KSIMVNGSVV NIPSFKVSAN DVVSVREKSR TQARIKAALE VSAQREKPTW VEVDNTKMEG
AFKRIPERSD LSAEINEQLI VELYSK
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