Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0208 |
Symbol | rpsD |
ID | 5660608 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 221973 |
End bp | 222593 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641234729 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_001500071 |
Protein GI | 157960037 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000000624869 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAAGAT ACTTGGGTCC AAAGCTCAAG CTCAGCCGCA GAGAAGGTAC AGACCTTTTC CTAAAAAGCG GCGTGAGAGC AATCGATTCG AAGTGTAAGC TTGAAACTGC ACCTGGACAA CACGGCGCTC GTAAGACCCG TTTGTCTGAG TATGGTGTTC AGCTACGCGA GAAACAAAAA GTTCGTCGTA TTTATGGTGT GCTAGAAAAG CAATTCCGTA ACTACTACAA AGATGCTGCA CGTACTAAAG GTAACACTGG TGAAAACCTA CTTACTCTTT TAGAAACCCG TCTAGATAAC GTTGTTTATC GCATGGGCTT TGGTGCAACA CGCGCTGAAT CACGTCAGCT AGTTAGCCAT AAGTCAATTA TGGTTAATGG TAGCGTCGTT AACATTCCAT CATTCAAAGT GTCTGCGAAT GATGTAGTGA GCGTTCGTGA AAAGTCACGC ACTCAAGCTC GTATTAAAGC GGCTTTAGAA GTGTCGGCTC AACGCGAAAA GCCAACATGG GTTGAAGTTG ACAACACTAA GATGGAAGGT GCTTTCAAGC GTATTCCTGA GCGTAGTGAT TTGTCTGCGG AAATTAACGA ACAGCTGATC GTCGAACTTT ACTCTAAGTA A
|
Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKTRLSE YGVQLREKQK VRRIYGVLEK QFRNYYKDAA RTKGNTGENL LTLLETRLDN VVYRMGFGAT RAESRQLVSH KSIMVNGSVV NIPSFKVSAN DVVSVREKSR TQARIKAALE VSAQREKPTW VEVDNTKMEG AFKRIPERSD LSAEINEQLI VELYSK
|
| |