Gene Spea_0201 details

Gene Information

• Locus tag: Spea_0201
• Symbol: rpsE
• ID: 5660602
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella pealeana ATCC 700345
• Kingdom: Bacteria
• Replicon accession: NC_009901
• Strand: +
• Start bp: 218442
• End bp: 218948
• Gene Length: 507 bp
• Protein Length: 168 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 641234723
• Product: 30S ribosomal protein S5
• Protein accession: YP_001500065
• Protein GI: 157960031
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.0000000549797
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAT TTGAAGCTCA ACAGCAAAAA GACGATCTGC AAGAGAAATT AGTTGCAGTT 
AATCGTGTTT CTAAAGTAGT TAAAGGCGGA CGTATCTTTA GCTTCACTGC ACTAACAGTA 
GTGGGTGATG GTAACGGTAA AGTCGGCTAT GGCTATGGTA AAGCGCGTGA AGTGCCTGCC 
GCAATTCAGA AAGCAATGGA AAAGGCTCGC CGTAACATTG TAAACGTTGA ATTGAACAAT 
GGTACTTTGC ACCACCCTGT AAAGGGTCGT CACACTGGTT CACGTGTTTA CATGCAACCA 
GCCTCTGACG GTACCGGTAT TATTGCCGGT GGCGCAATGC GTGCCGTATT GGAAGTAGCA 
GGCGTTCATA ACGTTCTGTC AAAAGCATAC GGTTCTACTA ACCCGATCAA CATCGTTCGT 
GCTACTGTCG ATGCGTTGGT GAATATGAAA TCACCTTCAC AAATCGCAGC TAAGCGTGGC 
CTGAATGTTA CTGAAATTCG AGGTTAA 

 

Protein sequence

MAKFEAQQQK DDLQEKLVAV NRVSKVVKGG RIFSFTALTV VGDGNGKVGY GYGKAREVPA 
AIQKAMEKAR RNIVNVELNN GTLHHPVKGR HTGSRVYMQP ASDGTGIIAG GAMRAVLEVA 
GVHNVLSKAY GSTNPINIVR ATVDALVNMK SPSQIAAKRG LNVTEIRG