| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0177 |
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| Symbol | rpoB |
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| ID | 5660578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 197180 |
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| End bp | 201211 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641234699 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001500041 |
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| Protein GI | 157960007 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0862378 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA ACGTCCACGT
GTTTTGGATA TTCCTTACCT TTTGTCAATC CAGTTGGACT CTTTTAAGAA GTTCACCGAT
CAAGATCCTA CAGGTGAGCG TGGCTTTGAA GCTGCCTTCC GTAGCGTTTT TCCCATCAAG
AGCTTTTCTG GTAATTCTGA GCTGCAATAT GTCAGCTATA AACTAGGCGA GCCTGTTTTT
GATGTGAAAG AGTGTCAAAT CCGCGGTGTT ACATACTCTG CACCACTACG CGTTAAATTG
CGTATGGTAC TGTATGACCG TGAAGCGGCA CCTGGCACAG TAAAAGACAT CAAAGAACAA
GAAGTCTATA TGGGGGATAT CCCTCTTATG ACTGACAACG GTACCTTTGT TATCAATGGT
ACTGAGCGTG TAATCGTATC TCAGCTACAC CGTAGCCCGG GCGTATTCTT TGATCATGAC
CGTGGTAAAA CCCACTCTTC AGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT
GGTTCATGGT TAGACTTTGA ATTCGATCCG AAAGATGCAC TGTTTGTTCG TATTGACCGC
CGTCGTAAGT TAGCGGCATC GATCATTCTG CGCGCTTTAG ATTATTCAAC TCAAGATATC
CTTGACCTGT TCTTCGATCG CGTCAACTTT AAGATCAAGA AAGATTCACT AGTAATGGAT
CTTGTTGCTG ACCGCCTACG TGGCGAAACA GCAAGCTATG ATATTAAAGA CGCTGAAGGC
ACTGTTCTTG TTGAGAAGGG TCGTCGCATC ACTGCACGTC ACATTCGTCA ACTTGAAAAG
ACAAACACAA CTGAGCTTGA AGTGCCAGTT GAGTACATCG CTGGTAAGAT TTCTGGACAA
GATTATATCG ATCCAGATAC AGGCGAAGTA TTGGTTTCTG CAAACGCAGA CATCAGCCTA
GAAGATCTAG CTAAGCTATC AATGGCTGGC ATCAAAGAGA TCAGCACTCT GTATATCAAT
GAACTTGATA ACGGTGCCTA CATCTCTGAC ACACTACGTA TTGATTCAAC AACTAACCGC
CTTGAAGCGC TAGTTGAAAT CTACCGTATG ATGCGTCCTG GTGAGCCACC AACCAAAGAT
GCAGCAGAAG CACTATTCAA CAACCTATTC TTCAGCGAAG AACGTTATGA CCTTTCAAAA
GTAGGTCGTA TGAAGTTCAA TCGTCGTCTA AGCATTGATG ACGATGAAGG TACTGGTATT
CTTTCTAAAG AAGATATCGT TGCCGTGATG AAGAACATCA TCGCAATCCG TAACGGTTTC
GACGAAGTGG ATGATATCGA TCATCTAGGT AACCGTCGTA TTCGTAGTGT TGGCGAAATG
GCTGAAAACC AGTTCCGTGT TGGTCTAGTT CGTGTTGAAC GTGCCGTACG TGAGCGTTTA
AGCCTTGGCG ATCTAAATGA GCTAATGCCT CAAGATTTGA TCAACGCTAA GCCAATCTCT
GCAGCTGTTA AAGAATTCTT TGGCTCTTCA CAGCTTTCAC AGTTCATGGA CCAAAACAAC
CCATTGTCAG AAGTGACGCA TAAGCGTCGT ATCTCTGCTC TAGGTCCTGG TGGTCTAACG
CGTGAACGTG CTGGTTTCGA AGTTCGAGAC GTACATCCGA CTCACTATGG TCGTCTATGT
CCAATCGAAA CGCCAGAAGG TCCAAACATT GGTTTGATCA ACTCGTTGTC AACCTTTGCT
CGTACCAACA ACTATGGTTT CCTTGAAACA CCTTACCGTA AGGTTATCGA TGGTGTGGTT
ACTGATGAGG TAGATTACCT TTCAGCAATC GAAGAAGGCC GTTACGTTAT TGCACAGGCT
ATCGTTCAGT TAGATGAGAA CGGTCGCATG ATGGACGAGT TAATTGCTTG TCGTCATAAA
GGTGATTCAA CCTTTATGGG TGCAGCTGAC ATCCAGTACA TGGACGTTTC ACCACAGCAG
ATTATTTCTG TTGCGGCGTC ACTAATTCCG TTCCTGGAAC ACGATGATGC TAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAGGCA GTTCCAACAC TAAAGGCCGA TAAGCCATTA
GTTGGTACTG GTATTGAGCG TACACTTGCT GTTGACTCAG GCGTGGTAGT TGCTGCTAAA
CGTGGTGGTT ATGTTGACTA CGTTGATGCG AGCCGTATCG TTGTTAAAGT TAACGAAGCT
GAGCTAACTC CAGGCGAAGC GGGTATCGAT ATCTACAACT TGACCAAATA CACGCGTTCT
AACCAGAACA CTTGTATTAA CCAGCGTCCT TGTTGTTCTG TTGGTGACCC AATTGTTCGT
GGCGACGTTC TTGCTGATGG CCCATCTACC GACTTAGGTG ATTTGGCTCT TGGTCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAACGGT TACAACTTCG AAGATTCGAT CTTAATCTCT
GAGCGTGTAG CTCAGGAAGA CCGTTTCACA ACTATCCACA TTCAAGAGCT TTCATGTATC
GCTCGTGATA CTAAGTTGGG TAGTGAAGAG ATCACAGCTG ATATTCCAAA CGTTGGTGAG
TCTGCGCTTT CTAAGCTAGA TGAATCAGGT ATCGTTTATA TCGGTGCAGA AGTTAAGGGT
GGTGACATCC TAGTTGGTAA AGTAACACCT AAAGGTGAAA CTCAGCTGAC TCCAGAAGAG
AAACTTCTCC GTGCAATCTT CGGCGAAAAA GCCTCTGACG TTAAAGACAG CTCACTACGC
GTACCTAACT CTGTTAAAGG TACTATCATC GACGTACAAG TATTTACTCG TGACGGCGTT
GAGAAAGACA AGCGTGCTGT AGAAATTGAA GAGATGCATA TCGCCCAGGC GAAGAAGGAT
TTGACTGAAG AGTTCCAAAT TCTTGAAGAT GGTGTTATCG GTCGTGCTCG CAACCTATTA
ATTGGTGCTG GTTTCGATGA AGCCCAACTT GCTGCAATTC CACGTTCACA ATTGTTGGTT
CAAACCATCG ATGATGAAGT TAAGCAAACT GAGCTAGAAC AACTAGCTGA GCAAGCGGAA
GAGCTAAAAG CCGATTTCGA TAAGAAGTTT GAAATCAAGC GTCGTAAGAT CACTCAAGGT
GATGACTTAG CACCTGGCGT ACTTAAGATC GTTAAGGTTT ACCTAGCGGT TAAGCGTACT
ATCCAGCCTG GTGATAAGAT GGCGGGTCGT CATGGTAACA AGGGTGTAAT CTCTAAGATT
TGTCCTGTTG AAGACATGCC ATACGACGAA AAGGGTAACC CAGTAGATAT CGTATTGAAT
CCACTAGGTG TACCTTCACG TATGAACATC GGTCAGGTAC TTGAAGTTCA TATGGGTGCT
GCAGCGAAAG GCATCGGTAA TCGTATTACT GAGATGCTGG AAGAGCAGCG CGAATTGGCA
GAACTTCGCG GATACATCAA GCAGGTTTAT GAACTAGGTG ACGAAGTAAT TCAAAAAGTC
GACATCGATT CATTTACTGA TGATGAAATC TTGCGTCTTG CTAAAAACCT AAAAGGCGGT
GTACCGATTG CTACACCTGC GTTTGATGGC GCCAAAGAGA AAGAGATCAA GCAGATGCTT
GAGCTTGCAG GCTTGCCACA ATCTGGTCAG TTAACACTGA TTGATGGTCG TACTGGTAAC
GAATTTGAGC GTAAGGTAAC CGTTGGTTAC ATGTATATGC TTAAGCTTAA CCACTTGGTT
GACGACAAGA TGCACGCTCG TTCTACGGGT TCGTACAGTC TTGTTACTCA GCAGCCATTG
GGTGGTAAAG CACAGTTCGG TGGTCAGCGT TTCGGTGAGA TGGAAGTATG GGCACTTGAA
GCTTACGGTG CAGCATATAC CCTTCAGGAA ATGCTAACTG TTAAGTCAGA TGATGTTAAC
GGTCGTACTC AGATGTATAA GAACATCGTC GACGGTAACC ATCAGATGCA ACCAGGTATG
CCTGAATCTT TCAACGTATT GTTGAAAGAG ATCCGTTCAC TTGGTATCAA CATTGAGTTA
GATACTAAGT AA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPR VLDIPYLLSI QLDSFKKFTD QDPTGERGFE AAFRSVFPIK
SFSGNSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLYDREAA PGTVKDIKEQ
EVYMGDIPLM TDNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLAASIIL RALDYSTQDI LDLFFDRVNF KIKKDSLVMD
LVADRLRGET ASYDIKDAEG TVLVEKGRRI TARHIRQLEK TNTTELEVPV EYIAGKISGQ
DYIDPDTGEV LVSANADISL EDLAKLSMAG IKEISTLYIN ELDNGAYISD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEALFNNLF FSEERYDLSK VGRMKFNRRL SIDDDEGTGI
LSKEDIVAVM KNIIAIRNGF DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLSTFA RTNNYGFLET PYRKVIDGVV
TDEVDYLSAI EEGRYVIAQA IVQLDENGRM MDELIACRHK GDSTFMGAAD IQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLKADKPL VGTGIERTLA VDSGVVVAAK
RGGYVDYVDA SRIVVKVNEA ELTPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGDPIVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRAVEIE EMHIAQAKKD
LTEEFQILED GVIGRARNLL IGAGFDEAQL AAIPRSQLLV QTIDDEVKQT ELEQLAEQAE
ELKADFDKKF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
CPVEDMPYDE KGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNRIT EMLEEQRELA
ELRGYIKQVY ELGDEVIQKV DIDSFTDDEI LRLAKNLKGG VPIATPAFDG AKEKEIKQML
ELAGLPQSGQ LTLIDGRTGN EFERKVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL
GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM
PESFNVLLKE IRSLGINIEL DTK
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