| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0109 |
|---|
| Symbol | |
|---|
| ID | 5660510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella pealeana ATCC 700345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009901 |
|---|
| Strand | + |
|---|
| Start bp | 122368 |
|---|
| End bp | 123633 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641234622 |
|---|
| Product | 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein |
|---|
| Protein accession | YP_001499973 |
|---|
| Protein GI | 157959939 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1519] 3-deoxy-D-manno-octulosonic-acid transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.964444 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGTA GCCTGTATTC GATAGTTTTA TATTTAATTA CTCCGCTGTT GTTGGTGTAT
CTTGCTGTGC GCGCCTTCAA AAGCAAAGAT TATCGAGGCC GCTGGAATGA GCGTTTTGGC
CTTAAATCAT TAAAGCACAC CGATCTCCTA GTGCATTCGG TCTCTATGGG TGAGACTTTA
GCGGCGATTC CATTAATTAA GCAGCTCCAG CAACAGCATC CACATCTGAG TATTACCATC
ACCACGACTA GCCCAACGGG ATCGGCCGAG GTGGTGCGTG CTTTTGGTAC CAGTGTGCAA
CATTGTTATC TACCTTTCGA CCTAGCTTGG TGCGCTCGCA GATTCGTTAA GCAGATAGCA
CCTAAGTGCT GCATCATTAT GGAAACAGAG CTTTGGCCGA ATCTGATCCA TTACCTTAAA
CAGGTTGACG CTAAGGTATT GTTGGCCAAT GCGCGTTTAT CGCAAAAGTC GGCTAACTCT
TATCAAAAGC ATCAAATACT CACAAGGCCC ATGCTCAAGT TACTCGATGG TATTGCGGCG
CAGTCACAGC AGGCGGCTGA GCGCTTTATT GGCTTAGGTG TTGCGCCTGA GCGAGTTACC
GTTTGTGGCA GCTTAAAGTT TGATATCAGT ATCGATGAGC AACGTATTAA TACGGCGAAA
GCGCTAAGAC TACAATGGCT GGCAACAGAT AAACCAGTTT GGGTGGCAGG CTCGGTGCAC
CCGGGGGAGT TTGACGCGTT AATTGCAGCG CATAGGCAGC TGTTAGCGAA ATACCCTAAT
GCCTTAATGA TAATGGTGCC GCGTCACCCT GAGCAATTTG ATGTCGCCGC CCAAGCCATA
AAGTCGGCTG GGTTGGCTCT CACTAGGCGT AGTAACGGTG AACCGGTATT GGTCGACACT
CAGGTTGTAC TCGGTGATAC TATGGGGGAG TTATTGACCT TTTATGGCGC CGCCGACCAA
GCCTTTGTTG GTGGTTCATT AATCGTGCAT GGTGGTCATA ATCCTCTCGA ACCCGCCGCT
ATGGGGCTGC CGGTGATGAT GGGGCCTAAC TATCGTGACT TTGTAGAAAT TACTGGGCTG
CTTGAGTCTG CTGGTGGTTT GCAAGTTGTC GATTCAGCTC AAGCGTTGAC GCAAAATTTG
ATTCGGTTAT TTGAAGATGA AGGCGCTTAT AAACAAGCGA GTACAGCGGC AAAATCTGTG
GTTGAGCAGA ACCGTGGATC GCTGGCTAAG CAGCTGGCAG TAGTGGAAAG TTATATTCAG
CGTTAG
|
|---|
| Protein sequence | MNRSLYSIVL YLITPLLLVY LAVRAFKSKD YRGRWNERFG LKSLKHTDLL VHSVSMGETL
AAIPLIKQLQ QQHPHLSITI TTTSPTGSAE VVRAFGTSVQ HCYLPFDLAW CARRFVKQIA
PKCCIIMETE LWPNLIHYLK QVDAKVLLAN ARLSQKSANS YQKHQILTRP MLKLLDGIAA
QSQQAAERFI GLGVAPERVT VCGSLKFDIS IDEQRINTAK ALRLQWLATD KPVWVAGSVH
PGEFDALIAA HRQLLAKYPN ALMIMVPRHP EQFDVAAQAI KSAGLALTRR SNGEPVLVDT
QVVLGDTMGE LLTFYGAADQ AFVGGSLIVH GGHNPLEPAA MGLPVMMGPN YRDFVEITGL
LESAGGLQVV DSAQALTQNL IRLFEDEGAY KQASTAAKSV VEQNRGSLAK QLAVVESYIQ
R
|
|---|
| |