Gene Spea_0083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpea_0083 
SymbolfliF 
ID5660484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella pealeana ATCC 700345 
KingdomBacteria 
Replicon accessionNC_009901 
Strand
Start bp92510 
End bp94210 
Gene Length1701 bp 
Protein Length566 aa 
Translation table11 
GC content48% 
IMG OID641234596 
Productflagellar MS-ring protein 
Protein accessionYP_001499947 
Protein GI157959913 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein 
TIGRFAM ID[TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACTA CATTGACTCA AACCAGCCCT GCCGCAACGA ATGCTGGTGT CAATAACCCG 
CTGAATTCAC TGAAAGAAAA GTGGCAACAA TATAATCGAG GCGACCGTCA GGTAGTGATA
TTAGCCGTAC TCGCTATTGT TGCCGCTTGC GTCATTGTGT TGATGCTATG GAGTGCGAGT
CAAGGCTACC GTCCCCTATA TGGTAACCAA GAAGGCGTTG AAACTTCACA AATTATCGAG
GTACTTGAAG CGGAAGGTAT TAGTTATCGT ATCGACGCGA ACAGCGGGCT GATCTTGGTT
ACCGAAGATA AGCTCGGCCC TGCCCGCATG CTACTGGCAG CCCGTGGCGT TAAGGCTAAG
GTGCCATCAG GAATGGAGTC GCTCGAAAAC TCTAACATAG GCACCAGCCA GTTTATGGAA
CAGGCCAAGT ATCGCTATAG CCTAGAGGGT GAGCTATCAC GCACCATTAT GGCATTGAAG
GCGGTTAAGA CCGCTCGAGT CCATTTGGCC ATCCCTAAGA AAACCCTATT TATTCGTCAA
CAGCCTGAGT TACCTACAGC CTCAGTGATG CTTGAGCTCT ATGCCGGTAG CAATATTCAA
CCGGAACAGA TTGAGTCTAT CGTCAACTTA GTGGCTGGTA GCGTTACCGG TATGACTCCC
GATCGTGTGC AAGTTGTCGA TCAAGAAGGT AACCACTTAA GCTCATCTAT TAGCGTTAAT
AAAGATATCA CTCAGGCACG AGACCGCCAG CTCAAATACA CCCAAGAGTT AGAGCAAAGC
TTAATTGATC GCGCCTCAAG CATGCTGCTG CCTATTCTCG GACGCGATCA CTTTGAAGTA
CAAGTCGCTG CAAACGTGAA CTTTAACCAA GTGGAAGAGA CCAAAGAATC TCTAGACCCA
CTGGCAGTCG TCACCAAAGA GAATCTAACC AGTAATGAAA CCAATAGCGA TATGGCCCTG
GGTATTCCTG GTGCTTTAAG CAATCAACCA CCAGCCGCTG AAGCAGATGA GAGTAACGCC
CGTCGTAACT TAAACTCACA GGAAAGCCGT CAATTCGACA CCGGCCGCTC AGTCAGACAC
ACCCGCTATC AACAGATGCA GTTAGAAAAT CTATCGGTAT CGGTACTGAT TAATAAACAA
TCCGCCGGAG AGACGGGCTG GACTCAGACT CAACTAGACC AATTAAGCAG CATGGTACAG
GACGCGATTG GCTTCTCTGC CGCTCGAGGC GATCAATTCA GTATTAACAG CTTTGATTTT
GCACCAACCC AAATTGCTGA ATTTGAACCT ATGCCATGGT GGCAGGGTGA AAGTTATCAA
ACCTACTTAC GCTACTTTAT CGGCGCGCTA TTAGGCCTTG CAATGATATT TTTCGTCTTG
CGCCCTCTGG TTAAGCATCT GACCAAAACG GTTGAGCATA ACTTAAAAAG CATTGATGAG
CCTGCGCAGC CAAGCTTGCC ACCAGCACAA GCGACCGTTA CCAAACTGGA AGGCGGTAAT
AATGCACAAG CAATCGCAGA TCAGTTGATA GGGCAAAACC AGAAGACTGG CGACCTTAAC
TGGAGCGGCG ATGCTAGCCT TCCAGAACCA AGCTCACCTT TAGCGGTCAA GATGGAGCAC
CTCAGTTTAC TCGCTAACCA AGAGCCTGCA CGCGTAGCTG AAGTGATAGC CCACTGGATT
GGCGATACTG AGCATGATTA A
 
Protein sequence
MSTTLTQTSP AATNAGVNNP LNSLKEKWQQ YNRGDRQVVI LAVLAIVAAC VIVLMLWSAS 
QGYRPLYGNQ EGVETSQIIE VLEAEGISYR IDANSGLILV TEDKLGPARM LLAARGVKAK
VPSGMESLEN SNIGTSQFME QAKYRYSLEG ELSRTIMALK AVKTARVHLA IPKKTLFIRQ
QPELPTASVM LELYAGSNIQ PEQIESIVNL VAGSVTGMTP DRVQVVDQEG NHLSSSISVN
KDITQARDRQ LKYTQELEQS LIDRASSMLL PILGRDHFEV QVAANVNFNQ VEETKESLDP
LAVVTKENLT SNETNSDMAL GIPGALSNQP PAAEADESNA RRNLNSQESR QFDTGRSVRH
TRYQQMQLEN LSVSVLINKQ SAGETGWTQT QLDQLSSMVQ DAIGFSAARG DQFSINSFDF
APTQIAEFEP MPWWQGESYQ TYLRYFIGAL LGLAMIFFVL RPLVKHLTKT VEHNLKSIDE
PAQPSLPPAQ ATVTKLEGGN NAQAIADQLI GQNQKTGDLN WSGDASLPEP SSPLAVKMEH
LSLLANQEPA RVAEVIAHWI GDTEHD