| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_0083 |
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| Symbol | fliF |
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| ID | 5660484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 92510 |
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| End bp | 94210 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641234596 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001499947 |
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| Protein GI | 157959913 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAACTA CATTGACTCA AACCAGCCCT GCCGCAACGA ATGCTGGTGT CAATAACCCG
CTGAATTCAC TGAAAGAAAA GTGGCAACAA TATAATCGAG GCGACCGTCA GGTAGTGATA
TTAGCCGTAC TCGCTATTGT TGCCGCTTGC GTCATTGTGT TGATGCTATG GAGTGCGAGT
CAAGGCTACC GTCCCCTATA TGGTAACCAA GAAGGCGTTG AAACTTCACA AATTATCGAG
GTACTTGAAG CGGAAGGTAT TAGTTATCGT ATCGACGCGA ACAGCGGGCT GATCTTGGTT
ACCGAAGATA AGCTCGGCCC TGCCCGCATG CTACTGGCAG CCCGTGGCGT TAAGGCTAAG
GTGCCATCAG GAATGGAGTC GCTCGAAAAC TCTAACATAG GCACCAGCCA GTTTATGGAA
CAGGCCAAGT ATCGCTATAG CCTAGAGGGT GAGCTATCAC GCACCATTAT GGCATTGAAG
GCGGTTAAGA CCGCTCGAGT CCATTTGGCC ATCCCTAAGA AAACCCTATT TATTCGTCAA
CAGCCTGAGT TACCTACAGC CTCAGTGATG CTTGAGCTCT ATGCCGGTAG CAATATTCAA
CCGGAACAGA TTGAGTCTAT CGTCAACTTA GTGGCTGGTA GCGTTACCGG TATGACTCCC
GATCGTGTGC AAGTTGTCGA TCAAGAAGGT AACCACTTAA GCTCATCTAT TAGCGTTAAT
AAAGATATCA CTCAGGCACG AGACCGCCAG CTCAAATACA CCCAAGAGTT AGAGCAAAGC
TTAATTGATC GCGCCTCAAG CATGCTGCTG CCTATTCTCG GACGCGATCA CTTTGAAGTA
CAAGTCGCTG CAAACGTGAA CTTTAACCAA GTGGAAGAGA CCAAAGAATC TCTAGACCCA
CTGGCAGTCG TCACCAAAGA GAATCTAACC AGTAATGAAA CCAATAGCGA TATGGCCCTG
GGTATTCCTG GTGCTTTAAG CAATCAACCA CCAGCCGCTG AAGCAGATGA GAGTAACGCC
CGTCGTAACT TAAACTCACA GGAAAGCCGT CAATTCGACA CCGGCCGCTC AGTCAGACAC
ACCCGCTATC AACAGATGCA GTTAGAAAAT CTATCGGTAT CGGTACTGAT TAATAAACAA
TCCGCCGGAG AGACGGGCTG GACTCAGACT CAACTAGACC AATTAAGCAG CATGGTACAG
GACGCGATTG GCTTCTCTGC CGCTCGAGGC GATCAATTCA GTATTAACAG CTTTGATTTT
GCACCAACCC AAATTGCTGA ATTTGAACCT ATGCCATGGT GGCAGGGTGA AAGTTATCAA
ACCTACTTAC GCTACTTTAT CGGCGCGCTA TTAGGCCTTG CAATGATATT TTTCGTCTTG
CGCCCTCTGG TTAAGCATCT GACCAAAACG GTTGAGCATA ACTTAAAAAG CATTGATGAG
CCTGCGCAGC CAAGCTTGCC ACCAGCACAA GCGACCGTTA CCAAACTGGA AGGCGGTAAT
AATGCACAAG CAATCGCAGA TCAGTTGATA GGGCAAAACC AGAAGACTGG CGACCTTAAC
TGGAGCGGCG ATGCTAGCCT TCCAGAACCA AGCTCACCTT TAGCGGTCAA GATGGAGCAC
CTCAGTTTAC TCGCTAACCA AGAGCCTGCA CGCGTAGCTG AAGTGATAGC CCACTGGATT
GGCGATACTG AGCATGATTA A
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| Protein sequence | MSTTLTQTSP AATNAGVNNP LNSLKEKWQQ YNRGDRQVVI LAVLAIVAAC VIVLMLWSAS
QGYRPLYGNQ EGVETSQIIE VLEAEGISYR IDANSGLILV TEDKLGPARM LLAARGVKAK
VPSGMESLEN SNIGTSQFME QAKYRYSLEG ELSRTIMALK AVKTARVHLA IPKKTLFIRQ
QPELPTASVM LELYAGSNIQ PEQIESIVNL VAGSVTGMTP DRVQVVDQEG NHLSSSISVN
KDITQARDRQ LKYTQELEQS LIDRASSMLL PILGRDHFEV QVAANVNFNQ VEETKESLDP
LAVVTKENLT SNETNSDMAL GIPGALSNQP PAAEADESNA RRNLNSQESR QFDTGRSVRH
TRYQQMQLEN LSVSVLINKQ SAGETGWTQT QLDQLSSMVQ DAIGFSAARG DQFSINSFDF
APTQIAEFEP MPWWQGESYQ TYLRYFIGAL LGLAMIFFVL RPLVKHLTKT VEHNLKSIDE
PAQPSLPPAQ ATVTKLEGGN NAQAIADQLI GQNQKTGDLN WSGDASLPEP SSPLAVKMEH
LSLLANQEPA RVAEVIAHWI GDTEHD
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