Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0046 |
Symbol | |
ID | 5660447 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 61701 |
End bp | 62882 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 641234559 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_001499910 |
Protein GI | 157959876 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTATCGC TAATAGGTCG AAACAATAAG CTGTTTGCTG CAGATATAAA GTGCTATGAA GCAGAGTTAA GCCATATTGT CTCCACATCA TCATTTCTCA TTCTTGGTGG GGCAGGTTCT ATCGGGCAAG CCGTGACGAA AGAGATCTTT AAACGCCAGC CCAAAAAGCT TCATGTTGTC GATATCAGTG AAAACAATAT GGTCGAGCTT GTTAGGGATT TGCGAAGCTC TTTTGGTTAC ATTGATGGTG AATTTAACAC CTATGCATTA GATATTGGTT CAATTGAATA TGATGCCTTT ATTAAAGCTG ATGGACATTA TGACTATGTA TTAAACCTTT CCGCCCTTAA GCATGTTCGT AGTGAAAAAG ATCCTTTTAC CTTGATGCGT ATGATTGATG TCAACATTTT TAATACTGAC AAAACTGTAC AGCAGGCGAT AGATTCAGGT GCTAAGAAGT ACTTTTGTGT GTCTACCGAT AAGGCCGCTA ACCCGGTTAA TATGATGGGG GCATCAAAAC GTATTATGGA GATGTTCCTG ATGCGCAAGA GTGAGCATAT CGCCATTTCG ACCGCGCGTT TCGCTAATGT TGCCTTCTCT GATGGTTCTC TTTTACATGG TTTTAATCAA CGTATTCAAA AGAGTCAGCC GATAGTCGCC CCCTACGATA TCAAACGTTA CTTTGTTACT CCTGAGGAGT CTGGTGAGTT ATGTTTGATG TCTTGTATTT TTGGTGAAAA TCGCGACATA TTCTTTCCTA AACTCAATGA AACTTTGCAC CTTATTTCTT TCGCTGATAT AGCGGTTAAA TACCTTAATA AACTAGGTTT TGAACCTTAT TTATGTGAAA CGGAAGATGA AGCGCGTGAG TTGGTGAAAA CATTACCCAA ACAAGGTAAA TGGCCATGCT TATTCACTTC TAGCGATACT ACGGGTGAAA AAGACTTCGA AGAGTTCTTT ACTGATAAAG AAACGCTAGA TATGGAGCGC TTCGACGGTT TTGGCATAAT CAAGAATGAC CCGCTTTATC AACAAGAGTT ACTAGAGACA TTTGAGAAAA AGATAGATCA AATGAAGCTA GAGCGTCAGT GGAGTAAAGA AGATATCGTT AAATTATTCT TCACCATGCT GCCTGAATTT GCTCATAAAG AAACTGGTAA ATATCTAGAT AGTAAGATGT AA
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Protein sequence | MLSLIGRNNK LFAADIKCYE AELSHIVSTS SFLILGGAGS IGQAVTKEIF KRQPKKLHVV DISENNMVEL VRDLRSSFGY IDGEFNTYAL DIGSIEYDAF IKADGHYDYV LNLSALKHVR SEKDPFTLMR MIDVNIFNTD KTVQQAIDSG AKKYFCVSTD KAANPVNMMG ASKRIMEMFL MRKSEHIAIS TARFANVAFS DGSLLHGFNQ RIQKSQPIVA PYDIKRYFVT PEESGELCLM SCIFGENRDI FFPKLNETLH LISFADIAVK YLNKLGFEPY LCETEDEARE LVKTLPKQGK WPCLFTSSDT TGEKDFEEFF TDKETLDMER FDGFGIIKND PLYQQELLET FEKKIDQMKL ERQWSKEDIV KLFFTMLPEF AHKETGKYLD SKM
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