Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spea_0040 |
Symbol | |
ID | 5660441 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella pealeana ATCC 700345 |
Kingdom | Bacteria |
Replicon accession | NC_009901 |
Strand | + |
Start bp | 42821 |
End bp | 43636 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641234547 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001499904 |
Protein GI | 157959870 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0102694 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGAAC GATATGCAGT ATTTGGTAAT CCAATTGGTC ACAGTAAGTC GCCAGCCATA CATTCCATGT TTGCCACAGA AACGGCTCAG TCATTAACTT ATGAGGCAAT CTTAGCGCCA ATTGATGCAT TTGAAGCGAC ATTCAAAGAG TTTGTGACTA ATAAGGGCTA TGGAGCCAAT GTTACCGTGC CTTTTAAAGA GCAAGCATTT GCACTTTGTG ATGAGTTAAG TGAGCAAGCT AAGCTAGCAG GCGCAGTAAA CACTCTATCA GTACTGGCCG ATGGCAAAAT TCGTGGTGAT AATACAGATG GGCTAGGCCT AGTTGCCGAT CTGCAACGAA ACTTAGGCAG TCTTACAGGG CTTAAAGTTC TTCTGGTTGG GGCTGGTGGT GCGGCTCGGG GTAGTGTGCT GCCATTATTG CAGGCAGGAA TTGCCAAGCT TAGTATCGTT AACCGCACAC AGGCGAAAGC AGAGATTCTG GCTGAACTCT TTTCGAGCTA TGGCGATGTG GTTTCTTTAC CGATAAGTCA TACGGGCAAA AGCTACGATG TGATTATTAA TTCAACCTCC TCAAGTTTAA GTGGTGAGGT GCCCAATATC AGTAGCGATA GCATTACATC ACAAACCGTT TGCTACGATA TGATGTACGG CAAAGAGCCA ACGTCATTTA ATGTATGGGC TAAGGCGCAG GGTGCCAAAC AGACCGTAGA TGGTTTAGGC ATGCTGGTGG GACAAGCTGC AGAAAGCTTT AATATTTGGC GCAAGGTAAG GCCAAGTGTT GAGCCTGTAT TAACTCAGCT TCGAGCCGAA CTCTAA
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Protein sequence | MTERYAVFGN PIGHSKSPAI HSMFATETAQ SLTYEAILAP IDAFEATFKE FVTNKGYGAN VTVPFKEQAF ALCDELSEQA KLAGAVNTLS VLADGKIRGD NTDGLGLVAD LQRNLGSLTG LKVLLVGAGG AARGSVLPLL QAGIAKLSIV NRTQAKAEIL AELFSSYGDV VSLPISHTGK SYDVIINSTS SSLSGEVPNI SSDSITSQTV CYDMMYGKEP TSFNVWAKAQ GAKQTVDGLG MLVGQAAESF NIWRKVRPSV EPVLTQLRAE L
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