Gene Spro_4880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpro_4880 
Symbol 
ID5602598 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSerratia proteamaculans 568 
KingdomBacteria 
Replicon accessionNC_009832 
Strand
Start bp5406487 
End bp5408310 
Gene Length1824 bp 
Protein Length607 aa 
Translation table11 
GC content53% 
IMG OID640940452 
ProductGTP-binding protein TypA 
Protein accessionYP_001481100 
Protein GI157373111 
COG category[T] Signal transduction mechanisms 
COG ID[COG1217] Predicted membrane GTPase involved in stress response 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000131447 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGATCGAAA ATTTGCGTAA CATCGCCATT ATTGCCCACG TTGACCATGG TAAGACCACC 
CTGGTTGATA AGCTGCTGCA ACAATCCGGT ACTTTCGGAG AGCGTGTAGA AGCCACCGAA
CGCGTAATGG ACTCCAACGA TTTGGAGAAA GAGCGTGGGA TTACCATCCT CGCTAAAAAC
ACCGCCATTA ATTGGAAAGA CTACCGCATC AACATCGTGG ATACCCCAGG ACACGCCGAC
TTCGGCGGTG AGGTTGAGCG TGTGATGTCA ATGGTTGACT CGGTGCTGCT GGTTGTGGAT
GCAATGGATG GCCCAATGCC GCAAACCCGT TTCGTGACCA AAAAAGCGTT TGCTAATGGT
CTGAAGCCGA TCGTGGTAAT CAACAAGGTT GACCGTCCGG GCGCACGTCC TGATTGGGTT
GTTGATCAGG TCTTCGACCT GTTCGTTAAC CTCGACGCGA CCGACGAGCA GCTCGACTTC
CCAATCATCT ATGCTTCTGC ACTGATGGGG ATCGCGGGTA CTGACCACAA CGAGATGGCG
GAAGACATGA CCCCGCTGTA TCAGGCGATC GTAGACCACG TGTCTGCACC GCAGGTTGAG
CTCGAAGCAC CGTTCCAGAT GCAGATCTCT CAGCTGGACT ACAACAACTA CGTGGGCGTT
ATCGGCATCG GCCGTATCAA GCGTGGTAAG GTCAAGCCGA ACCAACAGAT CACTATCATT
GATAGCGAAG GCAAAACCCG TAACGGTAAA GTTGCCAAGG TTCTGACCCA CATGGGTCTG
GAGCGTATCG AAGCGCCTAT CGCTGAAGCG GGTGACATCA TCGCTATCAC CGGTCTGGGC
GAGCTGAACA TCTCTGACAC CATCTGTGAT GTGAACGCGG TTGAAGCGCT GCCGGCACTG
TCTGTTGATG AACCGACGGT AACCATGTAC TTCAACGTCA ACACCTCTCC GTTCTGTGGT
AAAGAAGGCA AGTACGTGAC TTCACGTCAG ATCCTCGACC GTCTGAACAA AGAGCTGGTG
CACAACGTGG CACTGCGTGT TGAAGAAACC GAAGATGCTG ATGCATTCCG CGTATCTGGC
CGTGGTGAAC TTCACCTGTC GGTTCTGATC GAAAACATGC GTCGTGAAGG TTTCGAGCTG
GCGGTTTCCC GTCCTAAAGT TATCAACCGT AAAATCGATG GCCGCATGCA AGAGCCATTC
GAAAACGTGA CGCTGGATAT CGAAGAACAG CACCAGGGTT CAGTCATGCA AGCCATGGGT
GAGCGTAAAG GTGACGTTAA GGACATGATC CCAGACGGCA AAGGTCGTAT TCGCCTGGAT
TACCTGATCC CTGCGCGTGG CCTGATCGGT TTCCGTACCG AGTTCATGAC CATGACTTCC
GGTACTGGTC TGCTGTACTC CACCTTCAGC CACTACGATG ACGTGCGCCA GGGTGAAATC
GGCCAGCGCC AGAACGGCGT GCTGATCTCT AACGGCCAGG GCAAGGCAGT AGCATTCGCC
CTGTTCGGTC TGCAAGATCG CGGCAAGCTG TTCCTGGGTC ACGGTGCAGA AGTGTATGAA
GGCCAGATCA TCGGTATTCA CTCACGTTCT AACGACCTGA CCGTGAACTG CCTGACCGGT
AAGAAGCTGA CCAACATGCG TGCTTCCGGT ACTGACGAAG CGACTACCCT GGTTCCGGCT
ATCAAGATGT CCCTGGAGCA AGCTCTGGAA TTCATCGATG ATGACGAACT GGTAGAAGTT
ACGCCAACGT CCGTACGTAT TCGTAAACGT CACCTGACTG AAAACGATCG TAAGCGTGCA
AGCCGCGGTC CTAAAGAAGC TTAA
 
Protein sequence
MIENLRNIAI IAHVDHGKTT LVDKLLQQSG TFGERVEATE RVMDSNDLEK ERGITILAKN 
TAINWKDYRI NIVDTPGHAD FGGEVERVMS MVDSVLLVVD AMDGPMPQTR FVTKKAFANG
LKPIVVINKV DRPGARPDWV VDQVFDLFVN LDATDEQLDF PIIYASALMG IAGTDHNEMA
EDMTPLYQAI VDHVSAPQVE LEAPFQMQIS QLDYNNYVGV IGIGRIKRGK VKPNQQITII
DSEGKTRNGK VAKVLTHMGL ERIEAPIAEA GDIIAITGLG ELNISDTICD VNAVEALPAL
SVDEPTVTMY FNVNTSPFCG KEGKYVTSRQ ILDRLNKELV HNVALRVEET EDADAFRVSG
RGELHLSVLI ENMRREGFEL AVSRPKVINR KIDGRMQEPF ENVTLDIEEQ HQGSVMQAMG
ERKGDVKDMI PDGKGRIRLD YLIPARGLIG FRTEFMTMTS GTGLLYSTFS HYDDVRQGEI
GQRQNGVLIS NGQGKAVAFA LFGLQDRGKL FLGHGAEVYE GQIIGIHSRS NDLTVNCLTG
KKLTNMRASG TDEATTLVPA IKMSLEQALE FIDDDELVEV TPTSVRIRKR HLTENDRKRA
SRGPKEA