Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Spro_4412 |
Symbol | |
ID | 5602814 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Serratia proteamaculans 568 |
Kingdom | Bacteria |
Replicon accession | NC_009832 |
Strand | - |
Start bp | 4885291 |
End bp | 4887222 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640939974 |
Product | regulatory protein CsrD |
Protein accession | YP_001480634 |
Protein GI | 157372645 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000683384 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATTTA CCACCAAGCT CTCTGCATTG ATCACCCTGC TTGTTGCTCT GGCGATGTTT TTGATGCTGA TGGGCTGCTC ATACAGTTAC TTTTACGTCA CTCAGGAGAG GCTGGATCGC CGCTTCAATT CGCTGATGAC CTCGCTCGAT CAGGCCATGC TGCGTGAATC TCCACAGGAA CAGGAACAAT GGTTACCGCT GGTGATGCGT CCGCTTGGTA TCGTGGCCGT CAGCGTGGAT ACCAGCCACA GCAATCTTCT TTCTTATCAT CTGCCAACGG TAAAGCAGCC CTGGGAATCG CTCAACGGCT ACCGGCAGGT TTCCCTGCCG TTGATGCAGC ATCCCGGCGC TTCGCTACGC ATTACCTATA TTGACCCTTT CGCCAGCGAC GTGCGTTCGT TGCAATCCAC TGCGGCTGTC ACTTTGTCGA TCGTCGTGAT GGTGGTTATC TTGCTGCTCA GTTTGCGTTG GTTACGCGAT CAGGCCGACG GGGAGGACCG GCTGGAACGC CGTGCACGCC GTATTCTTAA TGGCGAACGA GAGAGCGTGA TGCAGGGCGA CGTGCGCGAA TGGCCGGCAA ACGTCAGCGG AGCACTCGAT CGCCTGCTGG CGGATCTGGC GGAAGCGCGC GAGGAGCGTA GCCGGGTCGA TACGCTGATC CGCGCCTTTG CCGCTCAGGA CGCCAAAACC GGGCTGAACA ACCGATTGTT CTTTGATAAC CAACTGACCA CGCAGTTGGA GGAGGAAGGT TCGCACGGCA TTGTCATGAT GGTGCGATTA CCGGATTTCG ACACGCTGCG GGAAACCCAC GGCAACAGTG CGGTGCAAGA ACTGATGTAT TCGCTGGTCA ATCTGTTGTC GACCTTCGTG ATGCGCTACC CGGCGGCGTT GCTGGCGCGC TATTTCCACA GCGATTTCAC CGTTTTGTTG CCGCATCGCA CGCTGAAAGA GGCGGACGGC ATTGCTTCAC AGTTGGTTCA TGCCATTGAC GCCTTGCCTT CGACGGCGCT TATCGATCGC GAGGCGTTTT TGCATATCGG TATTGTGGCC TACCGCAGTG GACAAAGTAC CGAACAGGTG ATTGATCATG CAGAGCAGGC CACGCGCCAC GCGACGCTGC AGGGGGAAAA CGGCTGGTAT GTCTACGACA GCCAGGTGCC GGAAAAAGGG CGCGGCAGCG TCAAATGGCG CACTCTGTTG GAACAGGTTC TGGCACGGGG CGGGCCACGG TTGTACCAGA AACCGGCAGT GACGGTGGAG GGGGAAGTTC ATCACCGGGA GATCATGAGC CGGATATACG ATGGGACCCA GGAACTGCTG CCATCTGAAT ATATGCCGTT GGTGCAGCAG TTGGGGCTGG CGGAGAGTTA CGACCGCCAG CATTTGAGTC GCATTCTTCC TTTACTGGCG CTGTGGCCTG AAGAAACGCT GGCATTTACG CTGTCCGTAG ATTCATTATT GCAACGCACT TTCCAGCGTT GGCTGCGTGA TAGCCTGTTA CAGTGTGAAA AAAGTCATCG TCGGCGAATT CTGATTGAAC TTGCAGAGGC AGACGTGTGT CAACATATCG ACCGTTTACG CCCGGTGTTG AGATTACTCT CTGGATTGGG GTGTCGTCTG GCCGTGTCCC AGGCGGGGTT AACCGTAGTT AGTACCTCCT ATATCAAGTC CTTACCGGTG GAACTGGTCA AGCTCCACCC TGGTTTGGTG CGGAGTATTG ATAAGCGGGA TGAGAATCAG CTGTTCGTTC AGAGCCTGAC GGGTGCCTGC GAAGGGACCA GTACCCAGGT TTTTGCCGCC AGCGTGCGGA CGCGTAATGA ATGGCAGACG CTGAAAGATC GCGGGATCCT CGGCGGGCAG GGTGACTTTT TCGCGTCGCC GGAACCGATA GACGCAGGGC GTAAAAAATA TTCGCGTCGT TATCGCGTTT AA
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Protein sequence | MRFTTKLSAL ITLLVALAMF LMLMGCSYSY FYVTQERLDR RFNSLMTSLD QAMLRESPQE QEQWLPLVMR PLGIVAVSVD TSHSNLLSYH LPTVKQPWES LNGYRQVSLP LMQHPGASLR ITYIDPFASD VRSLQSTAAV TLSIVVMVVI LLLSLRWLRD QADGEDRLER RARRILNGER ESVMQGDVRE WPANVSGALD RLLADLAEAR EERSRVDTLI RAFAAQDAKT GLNNRLFFDN QLTTQLEEEG SHGIVMMVRL PDFDTLRETH GNSAVQELMY SLVNLLSTFV MRYPAALLAR YFHSDFTVLL PHRTLKEADG IASQLVHAID ALPSTALIDR EAFLHIGIVA YRSGQSTEQV IDHAEQATRH ATLQGENGWY VYDSQVPEKG RGSVKWRTLL EQVLARGGPR LYQKPAVTVE GEVHHREIMS RIYDGTQELL PSEYMPLVQQ LGLAESYDRQ HLSRILPLLA LWPEETLAFT LSVDSLLQRT FQRWLRDSLL QCEKSHRRRI LIELAEADVC QHIDRLRPVL RLLSGLGCRL AVSQAGLTVV STSYIKSLPV ELVKLHPGLV RSIDKRDENQ LFVQSLTGAC EGTSTQVFAA SVRTRNEWQT LKDRGILGGQ GDFFASPEPI DAGRKKYSRR YRV
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