| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4251 |
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| Symbol | |
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| ID | 5606394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | - |
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| Start bp | 4712998 |
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| End bp | 4714980 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640939811 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001480473 |
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| Protein GI | 157372484 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0106048 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAACC TCGACTTATT TCCAGGCAGA CATTGGTACA TGCACGCAAA AATGACAAAT
ATGCTCTTCT CGAAAATGAT CGCATTAATG GCAGTGCTCG TCATGCTGCT GTGGGTGAGC
GCGCCCGTTC AGGCCGAGGC GTTTTCCGCC AATTTTAAAG GAACGGACAT ACACGAATTT
ATCAGTACAG CCAGTAAGGC GCTGGGGAAA ACCATCATTA TTGACGATGC GGTAAAAGGC
AAGGTTACCG TGCGCAGTTA TGAGCCGCTG GATGCCGGGC AATATTACCA ATTTTTCCTC
AACGTGCTTG ATGTCTATGG TTATGCGGTG ATCAGCATGC CCAACAACGT TCTGAAGGTG
ATCCCGGCGA AAGACGGCAA AAGGGCGGCG CTCAACGCCC TGAATACCCC AGCCGAAGGC
GATGAGCTGA TCATGCGGAT TGTGCCCCTG AACAATATCG CGGCGAAAGA GGTGGCGCCG
TTGATGCGCC AGTTTAACGA CAGCATTGGT ATCGGGAACG TGGTGTTCCT GGAAAGTGGC
AATGCGTTGT TGATCACCGG CCGTGCCGAT GTAGTCAATA GTCTGGTTGA GCTGGCCCAT
GAAATGGATC GTACCGAACA GGCCGGAGTG GTCTCTGTCG CCTTGCAACA TGCCTCCGCC
ACCGATGTGG TCAGCATTGT CACCACGTTA TTTCGGGATG AAAACCGCAC GAAAAAGGGC
GCGCTTCCCG GCATGAAAGT GGTTGCCGAT GAACGGACCA ACACCGTGCT GATTGCCGGC
GAACCGAGCC TGCAGGCGCG CATCGAAGGG ATTATCCAGC AGTTGGATCA AGAAAAAGCC
AGCCAGGGGA ATACCAAGGT GATCCGGCTG AAATATGCCA AAGCGCAAGG CCTGCTTGAA
GTGTTGTCCG GCGTCAGCGC CAATCTGCAA GACGAGAAAA AAACGGTCGG CAACAACGTT
TCCGTCATGA AGAACATGGT GATCAAGGCA GATGAACAGA CCAATGCGCT GATCATCAAC
GCCACACCGG ACGTGATGAG CAACCTGGAA AAAGTCATTG AGCAGCTTGA TATTCGCCGG
GCTCAGGTAC TGGTTGAAGC GGTGATTGTC GAAATGCAAA ACGCAGACGG TCTGAACCTG
GGTATCCAAT GGGCCAACCG TTACGGTGGC GGTACGCAGT TCGGCAATGC TCAGGCGCAG
ATCGCTCCCG GCTTTAAAGG GGGAATGACG GAGGTGTTTA AAAACGCCAA CGGTCTGGTC
ACGGGATTTT ACAGCGGTAA CTGGGCCGGC TTGCTCACCG CCATCAGTAA CCAGAGCCAG
AACAATATTC TCGCCACGCC GAGCATCATG ACGTTGGACA ACGAAGATGC CGAGTTTAGC
GTGGGTCAGG ATGTGCCAAT TCTGACCGGC TCGCAAACCA CCAACAGTGA CAACGTGTTT
AATACGGTGG CGCGCAAAAC CGTCGGCATC AAGCTCAAGG TCAAGCCGCA AATCAACAAA
GGGCAGTCGG TACTGCTGCA GATCGAACAG GAAGTTTCCA GCGTGGCGGA AAACAGCTCG
GTGGATAAGG ATAACCTGGG CGCGACTTTC AATATCCGGA CGGTGAATAA CACGGTGCTG
GTTGAAAGTG GTGAGACCGT GGTGGTCGGC GGTTTGCTGG ACAAGTCGCA ATCTGACAGC
AAAAGTGCGG TGCCGTTTTT GGAACGCATA CCGCTGCTTG GCGCTTTGTT CCGCTCTACT
TCTCATAAAG AGAGCAAACG GAATCTTATC TTGTTTATTC GCCCGACGGT CATACGCTCG
ACCGAGGAAT ACGCGCAAGA GAGTATGCGC AAAGCGGCCC GCTTCCGATC ACTCGACGCT
CAGCCTCTCC CGTTAAAAAC CCATGCGGAG GCGCAGCTCG ATAGGGTCGG TTCCACTGAG
AATGGCACTT TCCAGCGGAT CCAACGGCAA ATTGATGCAT TTTACCCGCG GGGGGAGCTG
TGA
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| Protein sequence | MYNLDLFPGR HWYMHAKMTN MLFSKMIALM AVLVMLLWVS APVQAEAFSA NFKGTDIHEF
ISTASKALGK TIIIDDAVKG KVTVRSYEPL DAGQYYQFFL NVLDVYGYAV ISMPNNVLKV
IPAKDGKRAA LNALNTPAEG DELIMRIVPL NNIAAKEVAP LMRQFNDSIG IGNVVFLESG
NALLITGRAD VVNSLVELAH EMDRTEQAGV VSVALQHASA TDVVSIVTTL FRDENRTKKG
ALPGMKVVAD ERTNTVLIAG EPSLQARIEG IIQQLDQEKA SQGNTKVIRL KYAKAQGLLE
VLSGVSANLQ DEKKTVGNNV SVMKNMVIKA DEQTNALIIN ATPDVMSNLE KVIEQLDIRR
AQVLVEAVIV EMQNADGLNL GIQWANRYGG GTQFGNAQAQ IAPGFKGGMT EVFKNANGLV
TGFYSGNWAG LLTAISNQSQ NNILATPSIM TLDNEDAEFS VGQDVPILTG SQTTNSDNVF
NTVARKTVGI KLKVKPQINK GQSVLLQIEQ EVSSVAENSS VDKDNLGATF NIRTVNNTVL
VESGETVVVG GLLDKSQSDS KSAVPFLERI PLLGALFRST SHKESKRNLI LFIRPTVIRS
TEEYAQESMR KAARFRSLDA QPLPLKTHAE AQLDRVGSTE NGTFQRIQRQ IDAFYPRGEL
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