| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_4011 |
|---|
| Symbol | aceE |
|---|
| ID | 5604673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 4448635 |
|---|
| End bp | 4451298 |
|---|
| Gene Length | 2664 bp |
|---|
| Protein Length | 887 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640939571 |
|---|
| Product | pyruvate dehydrogenase subunit E1 |
|---|
| Protein accession | YP_001480234 |
|---|
| Protein GI | 157372245 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2609] Pyruvate dehydrogenase complex, dehydrogenase (E1) component |
|---|
| TIGRFAM ID | [TIGR00759] pyruvate dehydrogenase E1 component, homodimeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00196742 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.272342 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAC GTTTAAACAA TGACGTGGAT CCGATCGAAA CCCGCGACTG GCTGCAGGCG
ATCGAATCGG TCATCCGTGA AGAGGGTGTT GAGCGAGCTC AGTTTCTGAT TGATCAGGTT
CTGGGTGAAG CCCGTAAAGG CGGTGTTAGC GTTGCAGCCG GTGCTGCGGC TCACAACTAC
GTCAACACCA TCGCGGTGGA AGACGAACCT GCTTACCCTG GTAACCTGGA TCTTGAGCGT
CGTATCCGCA GCGCTATTCG CTGGAATGCG GTAATGACCG TTCTTCGTGC TTCCAAAAAA
GATCTGGATC TGGGCGGCCA CATGGCTTCC TTCCAATCTT CTGCGACCTT CTATGAAGTC
TGCTTCAACC ACTTCTTCCG TGCACGCACC GAACAAGATG GCGGCGATCT GGTTTACTTC
CAGGGCCACA TCTCTCCGGG CGTTTACGCA CGTGCCTTCC TTGAAGGCCG CTTGACCGAA
GACCAAATGA ATAACTTCCG TCAGGAAGTT CACGGTAAAG GCCTGTCGTC TTACCCGCAT
CCTAAATTGA TGCCGGAATT CTGGCAGTTC CCGACCGTTT CCATGGGCCT GGGCCCAATC
AGCGCCATCT ATCAAGCGAA GTTCCTGAAA TATCTGGAAC ACCGTGGCCT GAAGAACACC
TCTGCTCAAA CCGTTTACGC CTTCCTGGGC GACGGCGAGA TGGATGAGCC GGAATCCAAG
GGCGCGATCA CCATCGCTAC CCGTGAGAAG CTGGACAACC TGGTATTCGT CATCAACTGC
AACCTGCAGC GTCTGGACGG CCCGGTCACC GGTAACGGCA AGATCATCAA TGAGCTGGAA
GGCATCTTCG CGGGCGCAGG CTGGCAGGTA CTGAAAGTGA TCTGGGGTGG TCGTTGGGAT
GAACTGCTGC GTAAAGATAC CAGCGGCAAG CTGATCCAAC TGATGAACGA AACCCTGGAC
GGCGACTACC AGACCTTCAA ATCCAAAGAC GGCGCTTACG TACGTGAGCA CTTCTTCGGT
CGCTTCCCGG AAACTGCTGC GTTGGTCAAA GATATGACCG ACGAAGAGAT CTGGGCGCTG
AACCGTGGCG GTCACGATCC GAAGAAAGTC TTTGCTGCAC TGAAAAAAGC GCAGGACACC
CAAGGCAAAC CAACCGTTAT CCTGGCCCAT ACCATCAAAG GTTACGGCAT GGGTGAAACC
GCGGAAGGTA AAAACATTGC TCACCAGGTG AAGAAAATGA ACATGGAAGG GGTTCACCAC
TTCCGCGATC GTTTCAACGT GCCGGTTGCC GATGCTGACA TCGAAAAACT GCCGTACGTC
ACCTTCGAGA AAGATTCCGA AGAGTACAAA TATCTGCACG AACGTCGTCA GGCGCTGGCA
GGCTATGTGC CTACCCGTAT GCCGAAGTTC ACCGAGAAGC TGGAAATGCC GGCTCTGGCA
GACTTCAGCT CCTTGCTGGA AGAGCAGAAC AAAGAAATTT CTACCACCAT CGCCTTCGTG
CGTGCCCTGA ACGTGATGCT GAAGAACAAG TCGATCAAAG ATCGCCTGGT TCCAATCATT
GCCGACGAAG CTCGTACCTT CGGCATGGAA GGTCTGTTCC GTCAGATCGG TATCTACAGC
CCGAACGGCC AGCAGTACAC TCCGCAGGAC CGTGAGCAGG TTGCTTACTA CAAAGAAGAC
GAGAAAGGCC AGATCCTGCA GGAAGGCATC AACGAACTGG GTGCAGCCTC TTCATGGTTG
GCCGCAGCGA CTTCCTACAG CACCAACGAT CTGCCAATGA TCCCGTTCTA CATCTACTAT
TCGATGTTCG GTTTCCAGCG TATCGGTGAC CTGTGCTGGG CAGCAGGCGA CCAACAGGCG
CGCGGCTTCC TGGTAGGCGG TACTTCAGGC CGTACCACCC TGAACGGTGA AGGTCTGCAG
CACGAAGACG GCCACAGCCA CATCCAGTCC CTGACTATTC CTAACTGTAT CTCTTACGAT
CCAGCTTACG CGTACGAAGT GGCAGTGATC ATGCACGACG GTCTGGTTCG CATGTACGGT
GACGCGCAAG AAAACGTCTA CTACTACATC ACCACGCTGA ACGAAAACTA CCACATGCCG
GCTATGCCGC AGGGTGCAGA AGAAGGTATC CGTAAAGGTA TCTACAAGCT GGACACTCTG
GCAGGCAGCA AAGGCAAGGT TCAGTTGCTG GGTTCAGGTT CTATCCTGCG TCACGTTCGT
GAAGCGGCGA AGATCCTGGC TGACGATTAC GGCGTGGGTT CTGACATCTA CAGCGTGACT
TCCTTCACTG AACTGGCGCG TGATGGCCAG GATTGTGAGC GTTGGAACAT GCTGCACCCA
ACCGAAACTC CGCGCGTACC TTACATCGCT CAGGTGATGA ACGAAGCGCC GGCGGTTGCG
TCTACCGACT ACATGAAGCT GTTCGCAGAA CAGGTTCGTA CTTACGTTCC AGCCAGCGAC
TATCGCGTTC TGGGTACTGA CGGCTTCGGT CGTTCAGACA GCCGCGAAAA CCTGCGCCAC
CACTTTGAAG TTGATGCTTC TTACGTTGTG GTTGCTGCAC TGGGTGAACT GGCTAAACGC
GGTGAAATCG AAGCTTCTGT GGTAGCTGAT GCGATTAAGA AATTCGACAT CAACCCAGAA
AAAGTTAACC CGCGTCTGGC ATAA
|
|---|
| Protein sequence | MSERLNNDVD PIETRDWLQA IESVIREEGV ERAQFLIDQV LGEARKGGVS VAAGAAAHNY
VNTIAVEDEP AYPGNLDLER RIRSAIRWNA VMTVLRASKK DLDLGGHMAS FQSSATFYEV
CFNHFFRART EQDGGDLVYF QGHISPGVYA RAFLEGRLTE DQMNNFRQEV HGKGLSSYPH
PKLMPEFWQF PTVSMGLGPI SAIYQAKFLK YLEHRGLKNT SAQTVYAFLG DGEMDEPESK
GAITIATREK LDNLVFVINC NLQRLDGPVT GNGKIINELE GIFAGAGWQV LKVIWGGRWD
ELLRKDTSGK LIQLMNETLD GDYQTFKSKD GAYVREHFFG RFPETAALVK DMTDEEIWAL
NRGGHDPKKV FAALKKAQDT QGKPTVILAH TIKGYGMGET AEGKNIAHQV KKMNMEGVHH
FRDRFNVPVA DADIEKLPYV TFEKDSEEYK YLHERRQALA GYVPTRMPKF TEKLEMPALA
DFSSLLEEQN KEISTTIAFV RALNVMLKNK SIKDRLVPII ADEARTFGME GLFRQIGIYS
PNGQQYTPQD REQVAYYKED EKGQILQEGI NELGAASSWL AAATSYSTND LPMIPFYIYY
SMFGFQRIGD LCWAAGDQQA RGFLVGGTSG RTTLNGEGLQ HEDGHSHIQS LTIPNCISYD
PAYAYEVAVI MHDGLVRMYG DAQENVYYYI TTLNENYHMP AMPQGAEEGI RKGIYKLDTL
AGSKGKVQLL GSGSILRHVR EAAKILADDY GVGSDIYSVT SFTELARDGQ DCERWNMLHP
TETPRVPYIA QVMNEAPAVA STDYMKLFAE QVRTYVPASD YRVLGTDGFG RSDSRENLRH
HFEVDASYVV VAALGELAKR GEIEASVVAD AIKKFDINPE KVNPRLA
|
|---|
| |