| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_2333 |
|---|
| Symbol | |
|---|
| ID | 5604070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 2545643 |
|---|
| End bp | 2547247 |
|---|
| Gene Length | 1605 bp |
|---|
| Protein Length | 534 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640937872 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001478562 |
|---|
| Protein GI | 157370573 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000292297 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATTG AATATGATTG CGACATTCTC GTCGTGGGTG CCGGTATTCT GGGCGGAGCC
GTCGCCAACA GCCTTGCCAA ACAGGGACGA TCAGTCACCA TTTTAGAGGC TGGCCCTCGC
GTTAAGCGTT CGGAAATCCT TGAAGCATTT CGCCAATATG GCAATAAATC GGACTATAAC
GGCCCTTACC CTGACGTACC CTGGGCGCCA AAATCCGCTT CGGGTAAATA TTCTGACGAC
TATATCGAGA GCGTCGGCAA TATCACCCAA AAGCCTGCTT TCTTGCGTTT GGTCGGTGGA
ACCACCTGGC ACTGGGGCGG TGCAACCTGG CGGAATCTGC CCAGCGATTT CAAATTAAAA
ACGCTGTACG GTCATGGCCG TGACTGGCCG ATTGACTACG ATATGCTGGA ACCCTGGTAT
CAACAGGCTG AAGAAGAGAT TGGCGTGAGT GGTTCAAACA CCGACGATCA GCGAGGTCTG
GGGCAACAAC CTTATCCCCC GCGCTCTAAA CCTTATCCCA TGGCAATGCA GCCCTGGAGC
TATTTGACTC AGCAAGTGGC CGAAAAGGTA TCAACAGTCA ATCACCACTT TGTTGATGAA
CCTAATGCAC GCGCGACGCG CCCCTATCAA GGGCGACCGA TCTGCGCGGG CAACAATAAC
TGTGCGCCTA TCTGCCCAAT TGGTGCACAG TTCTCCGGCG ATAAACCTGT TGTATGGGCC
GAACAGAATG GCGCTAAACT GTTAGTCAAT GCAGTGGCTT ACCGCATTGA AAAAGGACCG
GATAACAAGA TTGTCGCTAT CCACTATAAA AATCCGCAGG GTGAAAGCAC ACGCCTTACT
GCACGTTACT TCGTATTGGC AGCACATGGG GTAGAAACGC CGAAACTGAT GCTGATGTCG
GACATCGGTA ATTCGTCCGA TCAGGTAGGT CGTAACATGA TGGGGCACAC CGGGCGGTCT
ATCTCTATGC TGGCGAAAGA TCCCGTTTGG GCGGGACGTG GTCCCACGCA ACAAGGAAGC
ATCAACACCT GGCGCGACAC GCCGCTGCGG CACCAGCATG CGGCTATTCG CCACTTCCTG
GATAATACCG TTCCTAACGA ACTGATTACC CTCCGGTTGC TGAGTCAAGG TATTGTAGGC
CCGGAGCTTG ATCGTTTGAT CCGCCACAAT TCCGCGCGCT ACCTGAAGAT TGCATCTTAC
GTCGAGGTAT TGCCCGATCC GACCAACAGG GTCACCCTGA GCAATAAGCG CGATGCACTG
GGTCTTCCTA CGCCACGCAT CAACTATGAC ATTGCCCATG AATACACCAT GAACGCCATG
GCTTTGCTCT ATAAAGACTA TGACCAATTC AGGAGTCTGT TCGGTGCGAC CGAGGTGCTG
AATGATATTC AGGCTTGGGT ACCAAGTTCC CATATCATGG GCACCACCAT TATGGGGAGT
GACCCACGGG ACTCCGTGGT CAACCATGAA TGCCGCTCTT TCGATCATGC CAACCTCTTT
ATCACCAGTA CCAGCGTACA CCCCAGTTCC ACCGTGGTTA ACCCAACTCT GACCGGTTAT
GCGATTGCGC TGCGCGTCGC CGATATTATT AATAAAGAGA TTTAA
|
|---|
| Protein sequence | MAIEYDCDIL VVGAGILGGA VANSLAKQGR SVTILEAGPR VKRSEILEAF RQYGNKSDYN
GPYPDVPWAP KSASGKYSDD YIESVGNITQ KPAFLRLVGG TTWHWGGATW RNLPSDFKLK
TLYGHGRDWP IDYDMLEPWY QQAEEEIGVS GSNTDDQRGL GQQPYPPRSK PYPMAMQPWS
YLTQQVAEKV STVNHHFVDE PNARATRPYQ GRPICAGNNN CAPICPIGAQ FSGDKPVVWA
EQNGAKLLVN AVAYRIEKGP DNKIVAIHYK NPQGESTRLT ARYFVLAAHG VETPKLMLMS
DIGNSSDQVG RNMMGHTGRS ISMLAKDPVW AGRGPTQQGS INTWRDTPLR HQHAAIRHFL
DNTVPNELIT LRLLSQGIVG PELDRLIRHN SARYLKIASY VEVLPDPTNR VTLSNKRDAL
GLPTPRINYD IAHEYTMNAM ALLYKDYDQF RSLFGATEVL NDIQAWVPSS HIMGTTIMGS
DPRDSVVNHE CRSFDHANLF ITSTSVHPSS TVVNPTLTGY AIALRVADII NKEI
|
|---|
| |