| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_1998 |
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| Symbol | |
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| ID | 5603495 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Serratia proteamaculans 568 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009832 |
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| Strand | - |
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| Start bp | 2186335 |
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| End bp | 2189865 |
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| Gene Length | 3531 bp |
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| Protein Length | 1176 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640937536 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001478229 |
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| Protein GI | 157370240 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0120843 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATTTGTG CCAGGGCGAA ATTTAACACA TTGATTAAAG ATACCTTCAT GAGCATCTCC
GATAACCGTA ACCGTTCTGC TTCTTCTTCA TCCTCCCGTT ATTCCCTGCC TGAGCGCGCG
GGCGATTTGC GCCAGTTGGG GCAACTGACC GGCTCGGCCT GTGCCGTGGA ATGCGCCGAG
ATTGTCGAAC GTCACAACGG GCCGGTGATG CTGATCGCCC CGGACATGCA AAATGCCCTG
CGTCTGCGCG ACGAAATTCA GCAGTTTACC GATCAAATGG TCACCACGCT GTCCGACTGG
GAAACCCTGC CCTACGACAG CTTCTCGCCG CATCAGGAAA TCATCTCCGC CCGTCTGTCG
AGCCTGTACC ATCTGCCGAC CATGGTGCGC GGCGTGATCA TTCTGCCGGT CAATACTCTG
ATGCAGCGCG TTTGCCCGCA CGAATTCCTG CACGGCCACG CGCTGGTGAT GAAAAAAGGC
CAGCGCCTGT CGCGCGACAA ACTGCGCGCT CAACTGGAGC AGGCCGGCTA CCGCAGCGTT
GATCAGGTGA TGGAACATGG TGAATTTGCC ACCCGCGGTG CACTGCTTGA TCTGTTCCCT
ATGGGCAGCG AAGAACCTTA CCGCATCGAT TTCTTCGATG ACGAGATCGA CAGCCTTCGC
ACCTTTGATG TCGACAACCA GCGCACGCTC AGCGAAGTCG ATGCCATCAA CCTGCTGCCG
GCCCATGAAT TTCCAACCGA TAAAAATGCC ATCGAGCTGT TCCGCAGCCA GTGGCGTGAG
CAGTTTGAGG TGCGCCGCGA CGCCGAACAT ATTTATCAGC AGGTCAGCAA AGGCACCTGG
CCGGCCGGTA TCGAATACTG GCAGCCGCTA TTCTTCAGCC AGCCACTGCC TTCGTTGTTC
AGTTATCTGC CGGACAACAC GCTAATCGTC AATACCGGTA ATCTGGAGAG CGCCGCCGAA
CGCTTCTGGC AAGACGTCAA CCAACGCTAT GAGAGCCGCC GCGTCGATCC TATGCGGCCG
CTGTTGGCCC CGGACAGCCT GTGGTTACGG GTTGATGCGC TGTTTGGTGA ACTGAAAGCC
TGGCCGCGCA TGGCGCTGAA AACCGAAGAA CTGCCTGCCA AAGCCGGTAA CACCAATCTG
GATTACCGCA CACTGCCGGA TCTGGCGGTA CAAGCCCAGC AGAAAGCGCC ACTGGACAGC
CTGCGTCACT TTATTGAAAG CTTCGACGGC AGCATTATTT TCTCGGTCGA AAGTGAGGGA
CGCCGCGAAA CGCTGCAGGA TCTGCTCGGC CGCATCAAGC TCCGTCCTTC ACTGATCCAG
CATCTCGATC AGGCCGAGGC GGCGGGCCGT TACATGATGG TCGGCGCCTC CGAACGCGGT
TTCCTCGACG GCATGCGCAA CCGGGCCTTG ATCTGTGAAA GCGATCTGCT CGGTGAACGC
GTCAGTCGCC GTCGGCAAGA CAATCGTCGC ACCATCAATA CCGATGTTCT GATCCGCAAT
CTGGCAGAAT TACACCCCGG CCAACCGGTG GTGCATCTGG AACACGGCGT TGGCCGTTAC
GTTGGTCTGA CTACGCTGGA AGCCGGTGGC ATCAAGGCCG AATATCTGAT CCTGTCCTAC
GCCGGTGAAG ATAAACTCTA CGTGCCGGTC TCGTCGTTGC ACCTGATCAG CCGTTACGCC
GGCGGAGCGG ACGAAAACGC GCCGCTGCAC AAACTGGGCG GTGATGCCTG GTCGCGCGCA
CGGCAAAAAG CCGCCGAGCG GGTGCGCGAC GTGGCGGCAG AACTGCTGGA TATTTACGCC
CAGCGCGCCG CCAAAACCGG CTTTGCCTTT AAACATGACC GCGAGCAGTA TCAGCTGTTC
TGCCAGGCCT TCCCGTTTGA GACCACCCCG GACCAGGAGC AGGCGATTAA CGCCGTGCTG
AGCGACATGT GCCAGCCACT GGCCATGGAC CGCCTGGTGT GTGGTGACGT TGGCTTCGGC
AAAACCGAAG TGGCAATGCG CGCCGCCTTC CTTGCGGTGG AAAACGGCAA ACAGGTTGCG
GTACTGGTGC CAACCACCCT GCTGGCACAG CAGCATTTCG ACAACTTCCG CGATCGCTTC
GCCACCTGGC CGATCCGCAT TGAGATGATG TCGCGCTTCC GCAGTGCCAA GGAACAGCAA
CAGGTGATGG ACGATGCCGT CGACGGCAAA GTAGATATCA TCATCGGCAC CCACAAACTG
CTGCAGAGCG ATCTGCGCTG GAAAGATCTG GGGCTGCTGA TCGTCGATGA AGAACACCGA
TTCGGTGTGC GCCACAAAGA ACGCATCAAG GCGATGCGTG CCGATGTGGA TATCCTGACG
CTGACCGCCA CGCCGATCCC GCGTACCCTG AATATGGCCA TGAGCGGCAT GCGCGACCTG
TCGATTATTG CCACCCCACC GGCCCGCCGT CTGGCGGTAA AAACCTTTGT ACGCGAGTAC
GACAGCCTGG TGGTACGTGA GGCGATCCTG CGCGAAGTAC TGCGCGGCGG ACAGGTTTAC
TACCTGTATA ACGACGTTGA AAACATCGAA AAAGCCGCAG CAAAACTGGC GGAATTAGTG
CCGGAAGCGC GCATTGCCAT CGGCCACGGC CAAATGCGTG AACGCGATCT GGAACGGGTG
ATGAATGACT TCCATCACCA GCGCTTTAAC GTACTGGTCT GCACCACCAT TATCGAAACC
GGCATCGACA TTCCCAGCGC CAATACCATA ATCATCGAGC GTGCCGATCG CTTCGGGCTG
GCGCAGCTGC ACCAGCTACG TGGCCGCGTC GGACGTTCGC ACCATCAGGC CTACGCCTAT
CTGCTGACAC CGCCCCCGAA AGCCATGAGC ACCGACGCCC ATAAACGCCT GGAAGCCATA
GCATCACTGG AAGACCTGGG TGCCGGCTTT GCCCTGGCCA CCCACGATCT GGAGATCCGC
GGCGCAGGCG AACTGCTCGG TGAAGACCAG AGCGGCCAGA TGACCACCGT GGGTTTCTCG
CTGTATATGG AACTGCTGGA AAGCGCAGTG GACGCACTTA AAAACGGACG CGAGCCTTCT
CTGGAAGATC TCACCAGCAA CCAGACCGAA GTGGAGCTGC GCATGCCGGC CCTGCTGCCG
GACGATTACA TTCCGGACGT CAATACTCGC CTGTCGTTCT ATAAGCGCAT AGCCAGCGCG
AAAAACGACG GTGAACTCGA AGAGTTGAAG GTGGAGCTGA TTGACCGCTT TGGCCTGCTG
CCGGATCCGG CGCGCAACCT GCTGCAAAGC GCGGCGCTGC GTCAACATGC GCAGTTACTT
GGCATCAAGC GCATCGAAGG TAATGAACGC GGTGGGTTCA TTGAGTTTGG CGAAAAAAAC
AAGGTCGATC CAGGCTATTT AATTGGGCTG TTGCAAAGCA ATCCGCAGAT CTATCGCCTG
GACGGGCCGA GCAAGCTGAA ATTTATGCTG GATCTGACCG ATCGCCAGAA ACGCCTGAAA
TTTACCGAAG AGCTGTTGAC CGCATTCCGC GAGCATACGC TGGCGGCCTG A
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| Protein sequence | MICARAKFNT LIKDTFMSIS DNRNRSASSS SSRYSLPERA GDLRQLGQLT GSACAVECAE
IVERHNGPVM LIAPDMQNAL RLRDEIQQFT DQMVTTLSDW ETLPYDSFSP HQEIISARLS
SLYHLPTMVR GVIILPVNTL MQRVCPHEFL HGHALVMKKG QRLSRDKLRA QLEQAGYRSV
DQVMEHGEFA TRGALLDLFP MGSEEPYRID FFDDEIDSLR TFDVDNQRTL SEVDAINLLP
AHEFPTDKNA IELFRSQWRE QFEVRRDAEH IYQQVSKGTW PAGIEYWQPL FFSQPLPSLF
SYLPDNTLIV NTGNLESAAE RFWQDVNQRY ESRRVDPMRP LLAPDSLWLR VDALFGELKA
WPRMALKTEE LPAKAGNTNL DYRTLPDLAV QAQQKAPLDS LRHFIESFDG SIIFSVESEG
RRETLQDLLG RIKLRPSLIQ HLDQAEAAGR YMMVGASERG FLDGMRNRAL ICESDLLGER
VSRRRQDNRR TINTDVLIRN LAELHPGQPV VHLEHGVGRY VGLTTLEAGG IKAEYLILSY
AGEDKLYVPV SSLHLISRYA GGADENAPLH KLGGDAWSRA RQKAAERVRD VAAELLDIYA
QRAAKTGFAF KHDREQYQLF CQAFPFETTP DQEQAINAVL SDMCQPLAMD RLVCGDVGFG
KTEVAMRAAF LAVENGKQVA VLVPTTLLAQ QHFDNFRDRF ATWPIRIEMM SRFRSAKEQQ
QVMDDAVDGK VDIIIGTHKL LQSDLRWKDL GLLIVDEEHR FGVRHKERIK AMRADVDILT
LTATPIPRTL NMAMSGMRDL SIIATPPARR LAVKTFVREY DSLVVREAIL REVLRGGQVY
YLYNDVENIE KAAAKLAELV PEARIAIGHG QMRERDLERV MNDFHHQRFN VLVCTTIIET
GIDIPSANTI IIERADRFGL AQLHQLRGRV GRSHHQAYAY LLTPPPKAMS TDAHKRLEAI
ASLEDLGAGF ALATHDLEIR GAGELLGEDQ SGQMTTVGFS LYMELLESAV DALKNGREPS
LEDLTSNQTE VELRMPALLP DDYIPDVNTR LSFYKRIASA KNDGELEELK VELIDRFGLL
PDPARNLLQS AALRQHAQLL GIKRIEGNER GGFIEFGEKN KVDPGYLIGL LQSNPQIYRL
DGPSKLKFML DLTDRQKRLK FTEELLTAFR EHTLAA
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