| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_0091 |
|---|
| Symbol | |
|---|
| ID | 5606986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | + |
|---|
| Start bp | 95415 |
|---|
| End bp | 97262 |
|---|
| Gene Length | 1848 bp |
|---|
| Protein Length | 615 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640935576 |
|---|
| Product | selenocysteinyl-tRNA-specific translation factor |
|---|
| Protein accession | YP_001476329 |
|---|
| Protein GI | 157368340 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG3276] Selenocysteine-specific translation elongation factor |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00475] selenocysteine-specific elongation factor SelB
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTATCG CTACCGCCGG TCATGTCGAT CATGGCAAAA CCACCCTGCT GCAGGCGATC
ACCGGGATTA ACGCCGATCG CCTGCCGGAG GAGAAACGCC GCGGCATGAC CCTGGATCTG
GGCTATGCCT ACTGGCCGCA GCCCGATGGC CGGGTGCTGG GCTTTATCGA CGTGCCCGGT
CATGAAAAAT TCCTCGCCAA TATGCTGGCA GGCGTCGGCG GCATTGACCA TGCGCTGCTG
GTGGTGGCCT GCGACGACGG CGTGATGGCG CAAACCCGCG AGCACCTGGC GATACTGCGG
TTGAGCGGCC AGCCAGCGCT GACGGTGGCG CTGACCAAGG CCGATCGGGT GGATGAAGCC
CGCATTGAAG AAGTACGACG TCAGCTAAGT GACGAACTGG CGCACCAGGG TTGGCATCAG
GTGCCCATGT TCGTCACTGC GACGCTACAG GCGCGGGGAA TCGACGCGCT GCGCGCGCAT
CTGCTGGCGT TGCAGCCTGA CGAACATGCG TTAACCCGTC GCTTCCGTCT GGCGGTGGAT
CGCGCGTTCA GCGTTAAAGG CGCGGGTCTG GTGGTGACCG GTACCGCATT GGGTGGGCAA
GTCGCCGTGG GTGATCAGCT GTGGCTGACC GGTGCCGATA CCCCGGTGCG GGTACGAGGC
CTGCACGCGC AGAACCAACC GGTTGAGCAG GCGCAGGCCG GGCAGCGTAT CGCACTGAAT
ATCAGTGGTG ACGTCAGTAA AGAACAGGTG GCGCGCGGTG ACTGGCTGCT GGCGCAAAAG
CCGCTGGCCG CTGCCGAGCG CATTTTGGTC GCACTGGATG CTGACCAACC GATAAAACAC
TGGCAACCGC TGCATCTGCA TCATGCCGCC AGCCATATCA CCGGGCGAGT TTCGCTGCTC
AATGAGGGGC TGGCAGAGCT GATCCTCGAT CGTCCACTCT GGTTGGCGGA AAACGATCGG
CTGGTGCTAC GTGATATTGG CGCTCGCCAA ACGCTGGGTG GCGCCAGAGT GCTGAGTTTG
GCCACCCCGA AGCGGGGCAA GCGTCAACCT GAGTATCTGG CCTGGCTGGC GGCGCTGGCA
AAGGCCGACG ATGACCGGCA GGTGCTGGCG TTGCATCTGC CTAATGGCGC ACTGGATCTG
GCCGCCTTTG CCTGGGCCCG GCAACTGACG GCAGGCGAAC TGGCAGCATT GCTGGTGGGC
CGTGAGTTGC TGATTGCCGG CGATATGGCG CTGGCGCAAG AGAATGTGCA GCAGGGCCAA
CAGCGTCTGC TACAGGTATT GGCCGACTAC CACCAACAGC ATAGCGATCA GCTCGGTCTG
GGGCGGGCAC GCCTACGGCG CATGGCTTTG CCTCAGCTTG CTGAACCGCT GGTGTTTATG
ATGATCGATC GGCTGCTGGC CGAGGGATTG ATAAACAATA CCCGGGGTTG GTTGCACCTG
CCGGAACACG GCCTGGCGTT CAGTGCTGAA GAACTGGCCC TGTGGGAAAT TATCGAGCCG
CGGTTCGGCG ATGAAGCCTG GTGGGTTCGC GATTTGGCGA CCGAACTGGG CGAAGACGAG
GCCCGGATAC GGGCGACATT GCGTAAAGCG GCACAGTTGG GGCATGTCAC GGCGGTAGTG
GTGGATCGTT ACTACTTAAG CCAACGCATT GAACAGTTCG CTGCACTGAT CCGTGAGCTT
GATGTGGAGC AGGGCAGCAC CAATGCCGCC GATTTTCGTG ACCGGCTCGG CGTGGGTCGC
AAGCTGGCGA TCCAGGTGCT GGAGTTCTTC GACCGCAGCG GCTTCACCCG CCGCAAGGGC
AACCAGCACC TGCTGCGCGA CAGTGGGTTG TATACCCGTC ATACTTGA
|
|---|
| Protein sequence | MIIATAGHVD HGKTTLLQAI TGINADRLPE EKRRGMTLDL GYAYWPQPDG RVLGFIDVPG
HEKFLANMLA GVGGIDHALL VVACDDGVMA QTREHLAILR LSGQPALTVA LTKADRVDEA
RIEEVRRQLS DELAHQGWHQ VPMFVTATLQ ARGIDALRAH LLALQPDEHA LTRRFRLAVD
RAFSVKGAGL VVTGTALGGQ VAVGDQLWLT GADTPVRVRG LHAQNQPVEQ AQAGQRIALN
ISGDVSKEQV ARGDWLLAQK PLAAAERILV ALDADQPIKH WQPLHLHHAA SHITGRVSLL
NEGLAELILD RPLWLAENDR LVLRDIGARQ TLGGARVLSL ATPKRGKRQP EYLAWLAALA
KADDDRQVLA LHLPNGALDL AAFAWARQLT AGELAALLVG RELLIAGDMA LAQENVQQGQ
QRLLQVLADY HQQHSDQLGL GRARLRRMAL PQLAEPLVFM MIDRLLAEGL INNTRGWLHL
PEHGLAFSAE ELALWEIIEP RFGDEAWWVR DLATELGEDE ARIRATLRKA AQLGHVTAVV
VDRYYLSQRI EQFAALIREL DVEQGSTNAA DFRDRLGVGR KLAIQVLEFF DRSGFTRRKG
NQHLLRDSGL YTRHT
|
|---|
| |