Gene Ssed_R0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_R0004 
Symbol 
ID5610443 
TyperRNA 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp318985 
End bp320519 
Gene Length1535 bp 
Protein Length 
Translation table 
GC content54% 
IMG OID640931108 
Product16S ribosomal RNA 
Protein accession 
Protein GI 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0846799 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000408163 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
AGAGTTTGAT CATGGCTCAG ATTGAACGCT GGCGGCAGGC CTAACACATG CAAGTCGAGC 
GGAAACGGAG ATAGCTTGCT ATCAGACGTC GAGCGGCGGA CGGGTGAGTA ATGCCTAGAT
ATCTGCCTAG TCGTGGGGGA TAACAGTTGG AAACGACTGC TAATACCGCA TACGCCCTAC
GGGGGAAAGG AGGGGACCTT CGGGCCTTTC GCGATTAGAT GAGTCTAGGT GGGATTAGCT
AGTAGGTGAG GTAATGGCTC ACCTAGGCGA CGATCCCTAG CTGTTCTGAG AGGATGATCA
GCCACACTGG GACTGAGACA CGGCCCAGAC TCCTACGGGA GGCAGCAGTG GGGAATATTG
CACAATGGGC GAAAGCCTGA TGCAGCCATG CCGCGTGTGT GAAGAAGGCC TTCGGGTTGT
AAAGCACTTT CAGCGAGGAG GAAAGGTAGG TAGTTAATAA CTGCTTGCTG TGACGTTACT
CGCAGAAGAA GCACCGGCTA ACTTCGTGCC AGCAGCCGCG GTAATACGAG GGGTGCAAGC
GTTAATCGGA ATTACTGGGC GTAAAGCGTA CGCAGGCGGT TTGTTAAGCC AGATGTGAAA
GCCCCGGGCT CAACCTGGGA ATTGCATTTG GAACTGGCAA ACTAGAGTCT TGTAGAGGGG
GGTAGAATTT CAGGTGTAGC GGTGAAATGC GTAGAGATCT GAAGGAATAC CGGTGGCGAA
GGCGGCCCCC TGGACAAAGA CTGACGCTCA TGTACGAAAG CGTGGGGAGC AAACAGGATT
AGATACCCTG GTAGTCCACG CCGTAAACGA TGTCTACTCG GAGTTTGGTA ACTTAGTTAC
TGGGCTCCCA AGCTAACGCA TTAAGTAGAC CGCCTGGGGA GTACGGCCGC AAGGTTAAAA
CTCAAATGAA TTGACGGGGG CCCGCACAAG CGGTGGAGCA TGTGGTTTAA TTCGATGCAA
CGCGAAGAAC CTTACCTACT CTTGACATCC AGAGAATTCG CTAGAGATAG CTTAGTGCCT
TCGGGAGCTC TGAGACAGGT GCTGCATGGC TGTCGTCAGC TCGTGTTGTG AAATGTTGGG
TTAAGTCCCG CAACGAGCGC AACCCTTATC CTTATTTGCC AGCACGTAAT GGTGGGAACT
TTAGGGAGAC TGCCGGTGAT AAACCGGAGG AAGGTGGGGA CGACGTCAAG TCATCATGGC
CCTTACGAGT AGGGCTACAC ACGTGCTACA ATGGTCGGTA CAGAGGGTCG CAAAGCCGCG
AGGTGGAGCT AATCCCACAA AGCCGGTCGT AGTCCGGATC GGAGTCTGCA ACTCGACTCC
GTGAAGTCGG AATCGCTAGT AATCGTAGAT CAGAATGCTA CGGTGAATAC GTTCCCGGGC
CTTGTACACA CCGCCCGTCA CACCATGGGA GTGGGCTGCA CCAGAAGTAG ATAGCTTAAC
CTTTCGGGGA GGGCGTTTAC CACGGTGTGG TTCATGACTG GGGTGAAGTC GTAACAAGGT
AGCCCTAGGG GAACCTGGGG CTGGATCACC TCCTT
 
Protein sequence