| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4498 |
|---|
| Symbol | |
|---|
| ID | 5612535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5501921 |
|---|
| End bp | 5502361 |
|---|
| Gene Length | 441 bp |
|---|
| Protein Length | 146 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640935475 |
|---|
| Product | flavodoxin |
|---|
| Protein accession | YP_001476228 |
|---|
| Protein GI | 157377628 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0716] Flavodoxins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000121939 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAAAA TAGAACTTTT AGTGGGCACT ACCTTAGGTG GAGCCGAATA TGTAGCAGAT
GAATTGGCGG CTCAGTTGAC CCGTTTTGGG CATGAGAATC AGATCCATTT GACCCCAAAA
CTCACCGATT TGGACCCTAA ATCTTTGTGG TTGATCGTAT CATCGACGCA CGGAGCGGGC
GATCTACCAG ACAATATTAT GCCCTTTTTC GATGAGATCG CAGTTAAAAA ACCCGATCTT
AGCCAGACAA AATTTGCCAT CTGTGCCATC GGTGATTCAA GTTACGACAC TTTTTGTCTG
GGACCTGAAA AACTATCAAA AGTGCTGGAG GAATGCGGTG CACAAGTCTA TGTGGATAAG
ATCCAGATAG ATATTCAATA CGATCATATT CCAGAAGACC CCGCACTGGC TTGGTTAACC
CAATGGCAAG ATCAACTTTA A
|
|---|
| Protein sequence | MPKIELLVGT TLGGAEYVAD ELAAQLTRFG HENQIHLTPK LTDLDPKSLW LIVSSTHGAG
DLPDNIMPFF DEIAVKKPDL SQTKFAICAI GDSSYDTFCL GPEKLSKVLE ECGAQVYVDK
IQIDIQYDHI PEDPALAWLT QWQDQL
|
|---|
| |