Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4489 |
Symbol | |
ID | 5612619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5494247 |
End bp | 5494780 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640935466 |
Product | F0F1 ATP synthase subunit delta |
Protein accession | YP_001476219 |
Protein GI | 157377619 |
COG category | [C] Energy production and conversion |
COG ID | [COG0712] F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) |
TIGRFAM ID | [TIGR01145] ATP synthase, F1 delta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0316955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00000555813 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTGAAA TAACCACCAT CGCTCGTCCT TACGCAAAGG CAGCGTTTGA TTTTGCTATT GAAAACAACG CAGTTGATAG TTGGGCAGAG ATGCTGAACT TCGCGGCTAT GGTAAGTGAA AACGAAACCA TTAAGCCACT GCTTGCCGGC GGATTAGCCA GCAATAAGCT TGCCGAACTC TTTATTGGAG TTTGTGGTGA GCAGGTCAAT GAGCAAGGTC AAAATCTGTT AAAGGTAATG GCTGAAAACG GTCGTTTAGA AGTACTACCT GCTGTGGCTC AACAATTTGT TGAACTATGC AATGAGTGGG CAAAAGAGAT TGAAGCTACT GTAGTTTCAG CTGTTGAGCT TACTTCAGAA CAGCAACAGG ATATTAGTGT TTCTTTAGAG AAACGTCTCG CACGCAAAGT TAAGCTGAAT TGCAGCATAG ATGCCAGCCT TGTAGCTGGT GTAATTATCA CGGCAGGAGA CCTGGTCATT GATGGCTCGG TCCGCGGAAA AATTTCGCGT CTGTCTGATA CTCTGCAATC GTAA
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Protein sequence | MAEITTIARP YAKAAFDFAI ENNAVDSWAE MLNFAAMVSE NETIKPLLAG GLASNKLAEL FIGVCGEQVN EQGQNLLKVM AENGRLEVLP AVAQQFVELC NEWAKEIEAT VVSAVELTSE QQQDISVSLE KRLARKVKLN CSIDASLVAG VIITAGDLVI DGSVRGKISR LSDTLQS
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