| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4486 |
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| Symbol | |
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| ID | 5612616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5490371 |
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| End bp | 5491747 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935463 |
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| Product | F0F1 ATP synthase subunit beta |
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| Protein accession | YP_001476216 |
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| Protein GI | 157377616 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000121569 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCACAG GTACTGTTGT CCAAGTAATT GGCGCGGTTG TGGACGTTGA GTTTCCACAT
GATGCCGTAC CTCAGGTATA TGACGCTCTA GAGATCAAAA GTGAAGGCTT GGTGCTGGAA
GTTCAGCAGC AACTAGGTGG TGGTGTAGTT CGTACCATCG CTATGGGTTC TTCAGATGGT
CTGCGTCGTG GCCTTGAGGT TGTTAACTCT GGATCACCAA TTACTGTTCC GGTTGGGGAA
AAAACCCTTG GCCGTATTAT GAACGTATTG GGTGAGCCAG TGGATGAAGC GGGTCCTATC
GGTGAAGAAG ATCGCTATGT GATCCACCGT GAAGCTCCTT CATATGAAGA TCAGTCAAGC
TCCACTGAAC TTTTAGAGAC TGGTATCAAG GTTATTGACC TTGTATGTCC ATTCGCTAAG
GGTGGTAAAG TTGGTCTGTT TGGTGGTGCT GGTGTTGGTA AGACCGTCAA CATGATGGAA
CTTATTAACA ACATCGCAAA AGCACACTCT GGTTTATCAG TTTTTGCCGG TGTAGGTGAG
CGTACTCGTG AGGGTAACGA TTTCTACTAC GAGATGGAAG ATTCTGGCGT TCTCGATAAA
GTGGCCATGG TATATGGTCA GATGAACGAG CCTCCAGGAA ACCGTCTACG TGTGGCACTG
ACTGGTCTGA CTATGGCCGA GAAGTTCCGT GACGAAGGTA AAGATGTTCT TTTCTTCGTT
GATAACATCT ATCGTTACAC CTTGGCGGGT ACTGAAGTAT CTGCACTGCT AGGCCGTATG
CCATCAGCAG TAGGTTACCA GCCAACATTG GCTGAAGAGA TGGGTGTACT TCAGGAGCGT
ATTACATCGA CTAAGACAGG GTCTATTACC TCTGTTCAAG CCGTATACGT ACCTGCGGAT
GACTTAACGG ATCCGTCACC AGCAACAACC TTCGCTCACT TAGATGCGAC TGTTGTATTG
TCACGTAACA TTGCTTCTCT GGGTATCTAC CCAGCGGTTG ACCCATTGGA TTCGACTTCA
CGTCAGCTGG ATCCACAGGT TGTTGGCCAA GAGCATTATG ATGTTGCTAC TGGTGTACAG
ACTCAGCTAC AACGCTATAA AGAGCTTAAA GATATCATTG CGATACTTGG TATGGATGAA
TTATCAGATG ATGATAAGAC AACTGTATTC CGTGCTCGTA AGATTGAAAA ATATCTTTCA
CAGCCTTTCT TCGTTGCAGA AGTATTCACC GGTTCTCCAG GTAAGTACGT TTCTCTTAAA
GACACCATTC GTGGCTTTAA GGGTATTCTA GATGGTGAGT TCGATCACCT TCCAGAGCAA
GCGTTCTACA TGGTTGGTTC TATCGACGAA GCCGTTGAGA AAGCTAACAA AAAATAA
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| Protein sequence | MSTGTVVQVI GAVVDVEFPH DAVPQVYDAL EIKSEGLVLE VQQQLGGGVV RTIAMGSSDG
LRRGLEVVNS GSPITVPVGE KTLGRIMNVL GEPVDEAGPI GEEDRYVIHR EAPSYEDQSS
STELLETGIK VIDLVCPFAK GGKVGLFGGA GVGKTVNMME LINNIAKAHS GLSVFAGVGE
RTREGNDFYY EMEDSGVLDK VAMVYGQMNE PPGNRLRVAL TGLTMAEKFR DEGKDVLFFV
DNIYRYTLAG TEVSALLGRM PSAVGYQPTL AEEMGVLQER ITSTKTGSIT SVQAVYVPAD
DLTDPSPATT FAHLDATVVL SRNIASLGIY PAVDPLDSTS RQLDPQVVGQ EHYDVATGVQ
TQLQRYKELK DIIAILGMDE LSDDDKTTVF RARKIEKYLS QPFFVAEVFT GSPGKYVSLK
DTIRGFKGIL DGEFDHLPEQ AFYMVGSIDE AVEKANKK
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