Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4473 |
Symbol | |
ID | 5613155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 5462886 |
End bp | 5463647 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640935443 |
Product | protein of unknown function DUF610, YibQ |
Protein accession | YP_001476203 |
Protein GI | 157377603 |
COG category | [S] Function unknown |
COG ID | [COG2861] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00361162 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000426246 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCGCTTTC TTTTAGTTTT ATTTATTGCA TGTTTTTCAG GTGGTTACGC AGAAGCATCT CAAGTCGCGA TCATTATTGA CGATATCGGT TATCGTCAAT CCGATGAAGC CGTACTGTCT TTACCAAATA CAGTCACCTT TTCAGTTCTT CCTCATACCC CTTTAGGTTC CGAAGTTGCC AAGAAAGCCC ATAATATGGG GCACGAAATC ATGTTGCACC TTCCTATGCA GGCGTTAAAT GGTAAAACTA TGGGGCCAGG TGGACTAACG AATACGATGG ACGAGGCTGA ATTAAAACAT ACGCTGGAGA AGGCATTCGA CAACATTCCT TATGCAAAAG GGGCTAACAA TCATATGGGA AGCTTACTGA CCCAACTGGA CGAGCCGATG CTGTGGGTAA TGGAGAGTCT CAAACAGAGA GAGCTCTATT TCGTAGACAG CATGACAACC CGTTTCACAA AGGCCAGCAA TAAGGCTGAA CAACTGGGGA TCCCTCTACT CAGGCGGCAA GTTTTTTTAG ATAATGACGT GTCACAGTCA GCACTGGAAG AACGATTCGA ACATCTGATA TCACTGGCTC ATAAGCAAGG TCAGGCAGTC GCTATAGCGC ACCCTTACCC TGAAACAATC AAATTTTTAA AACGTAATCT TCACAGGTTG GATAAGGCAG GTATCGAGCT GGTTAAGACA TCATCTTTAT TACCATACAA GCTGGCAAAT AAAGAAAAGA AGGGAGGAGA CTCTGCTATA CGGCTGAAGT AG
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Protein sequence | MRFLLVLFIA CFSGGYAEAS QVAIIIDDIG YRQSDEAVLS LPNTVTFSVL PHTPLGSEVA KKAHNMGHEI MLHLPMQALN GKTMGPGGLT NTMDEAELKH TLEKAFDNIP YAKGANNHMG SLLTQLDEPM LWVMESLKQR ELYFVDSMTT RFTKASNKAE QLGIPLLRRQ VFLDNDVSQS ALEERFEHLI SLAHKQGQAV AIAHPYPETI KFLKRNLHRL DKAGIELVKT SSLLPYKLAN KEKKGGDSAI RLK
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