| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4472 |
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| Symbol | |
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| ID | 5613154 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5461647 |
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| End bp | 5462852 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935442 |
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| Product | C-terminal processing peptidase |
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| Protein accession | YP_001476202 |
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| Protein GI | 157377602 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0793] Periplasmic protease |
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| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0890612 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000524725 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCACAGT TTATTCGTTA TATCACATGC ACTCTTTTAG GCTTAGCGCT CGGCCTATCA
GTGACCTTAT CCGGTCAGGA AAATGCAGAT CAGTATCACC CTCGCCTCAA CTATCCGTTG
TTACTCGATG TTATCGATAC CATAGAAACT TATTACGTGA AAGAACTGAC TCAGGATGAG
TTAATCTCTG CTGCAATTGA GGGGATTTTT GACAAATTAG ATCCCTATTC TGGTTTTCTG
GATAAACAGG CATTTTCTAA TATCAGGGAT GCTAACAAGG GAGAATACTT CGGATTTGGC
ATTGAAATCG CGGCCGAAGA CGACAAGATC ACGATAATAA CCCCCTTTCC AAGTTCACCT
GCTGAGCTTG CAGGGATCAG AGCTGGCGAT CAGATAGTTA AGCTTAACAA TAAAAAGGTT
AACCCGGAGC AGCTGGACAC ATTACTTAAA GAGATAAAAC ACCACAGCCA GAACAACCAA
TCGATAAATC TCGCGTTGAC TCATTCCAAT ATGAATTCAG TATTTGAAGT CACACTCGTT
CCAAGCATTA TTTCCGTACA GTCAGTTACA GCAAAGCTCT ACGAAGACAA GATTGGCTAT
ATAAGGCTCG CAAGCTTTCA AGATAACTCT ACCGAGGAGA TGATCGGGCA GCTGACTCAG
TGGCAACCTA TTGGGCTTAA AGGCATAATA TTGGACCTAA GGAACAACCC CGGCGGCCTG
CTAGACCAAG CCATCAAAAT TGCCGATATC TTCATCGCCA AAGGACGAAT AGTCTCAACT
GAAGGGCGAT TCTTTGATGC GAACTCCGAT TACTTTGCCT CACCCCAAAC TATGCTTTCA
TCGGTTCCCA TGATAGTTCT GATCAACAAG GGCTCGGCTT CCGCTTCCGA GGTTCTCGCC
GCAGCCTTAC AAGAAAACGA CAGAGCAACA CTTATAGGCG AAACCAGCTT TGGCAAAGGC
ACGGTCCAAA GTTTGATCCC AACCCTGGTA GAGGGAAATG CCATCAAGCT AACAATAGCA
AAATATACGA CACCAAAGGG CCACGATATC AACACCAAAG GAATCGAACC GGATATAAAA
CTTGAAGCAG AAACTGTAAC AATCGGTGAA AGTGTGCCTA TAATCGACAA AAATATGGTT
CATGATGAAA TCAGGGATGA TCTGATTCTT GATTCTGCAA TCACATGGAT TAAAACCAAT
ACATAA
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| Protein sequence | MSQFIRYITC TLLGLALGLS VTLSGQENAD QYHPRLNYPL LLDVIDTIET YYVKELTQDE
LISAAIEGIF DKLDPYSGFL DKQAFSNIRD ANKGEYFGFG IEIAAEDDKI TIITPFPSSP
AELAGIRAGD QIVKLNNKKV NPEQLDTLLK EIKHHSQNNQ SINLALTHSN MNSVFEVTLV
PSIISVQSVT AKLYEDKIGY IRLASFQDNS TEEMIGQLTQ WQPIGLKGII LDLRNNPGGL
LDQAIKIADI FIAKGRIVST EGRFFDANSD YFASPQTMLS SVPMIVLINK GSASASEVLA
AALQENDRAT LIGETSFGKG TVQSLIPTLV EGNAIKLTIA KYTTPKGHDI NTKGIEPDIK
LEAETVTIGE SVPIIDKNMV HDEIRDDLIL DSAITWIKTN T
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