Gene Ssed_4465 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4465 
Symbol 
ID5613245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5454623 
End bp5455075 
Gene Length453 bp 
Protein Length150 aa 
Translation table11 
GC content46% 
IMG OID640935435 
ProductNLP/P60 protein 
Protein accessionYP_001476195 
Protein GI157377595 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.231412 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCTAAAAC CTTTACTCAT CCTCTTGTCT ATATTGTTGT TGAGTGCCTG TGGGAGTCTT 
CCTCCCGAAC CAGATACTAA AGCGTCGAAT CAGTTAGAAC GTCAGCTAAT GGCATTTCAT
CAAGAGTGGC GCGGTACACC ATATCGACTG GGGGGAATGA ACAAACGAGG CGTCGATTGC
TCCGGTTTCG TCTATCTGGC CTATAAAGAG TTGTTGGGAC AAGCGATACC CAGAACCACT
TCTGAGCAAT TACATTCGGG TGCAAAAGTG TCCAAGGACA GGCTCAATGC GGGCGATCTG
GTGTTCTTTA AAACCGGTTG GACTACACGT CATGTGGGCA TCTATTTGAG TGATTCTAAA
TTCCTGCATG CATCGACGAG TCAAGGGGTG ATGATCTCGA CACTGGAAAA TAGCTACTGG
AAACGAAAAT ATTGGTTATC CAGACGTTTA TAA
 
Protein sequence
MLKPLLILLS ILLLSACGSL PPEPDTKASN QLERQLMAFH QEWRGTPYRL GGMNKRGVDC 
SGFVYLAYKE LLGQAIPRTT SEQLHSGAKV SKDRLNAGDL VFFKTGWTTR HVGIYLSDSK
FLHASTSQGV MISTLENSYW KRKYWLSRRL