| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4462 |
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| Symbol | |
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| ID | 5613242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5450548 |
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| End bp | 5451696 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935432 |
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| Product | ABC-2 type transporter |
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| Protein accession | YP_001476192 |
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| Protein GI | 157377592 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.510043 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAGTA ACATAATGAC TATGCTCAGA AAAGAGCTGA TCGATGCGGC AAGAGACAAA
CGCTCCGTTA TGGCAGGCCT ATATTATGCT ATCGGTACTC CACTGTTGAT GTGTGGCATG
TTTATGCTGC TCATCGGACA GATGTCGAGC CCGGAAGATC TCAACATCAA GATTGAAAAT
GGTGAGCGAG CACCGGATCT GGTGAAATAT CTCTCCAGCC AGGGGATCAC CCATGGCGAC
GCTCAGGACA AGAGTCTGGA TATTAAAGAT ATCCGCTTAA TCTTCAGCGA TGATTATGCC
GAGCAGATGG CGAAAGGGTT AAGCGCCGAG GTGACTCTGG TCGCCGATAA TTCAAATGAG
AAGCTGCAAA ACTCGATAAG ACGTCTGGAG AAAAACCTTC AGACCTACAG CGCCGAAATG
GGTAGCTTAA GGCTAATTGC CAGAGGAATC GATCCGCGTG TGGTTCAACC CATTAAGGTC
AATGTCGAAG ATCAGGCGAC GCCGGACTCT AAGGGGGGTG TGATCTTGGG CGTGGCGACT
ATGACCATGA TCTATGCCGT ATTTATCTCG GGCATGAACC TGGCCATCGA TACCAGTGCC
GGCGAACGTG AGCGTAACTC GTTGGCACTG CTGCTAAGCC ATCCCGTTTC CACACGGAAT
ATTGTCTTAA CGAAAGTCTT GGCGGTCACC GTCTTCGCTA TGCTGGGACT CCTGTTAACC
CTGATAATCT CTAAGCTCTC CTACTCTTTC GTCCCTTGGC AGGAGCTGGG CTTCACGGTT
TCAATCAGCA CGAACTTCAT ACTGTTAATG CTCTTGATCG GACTCCCGAT AGCCATCATG
GCCGCCAGCC TACAGCTGTT TGTCTCATTT ATGGCGAAGA CATTTAAGGA AGCACAGTCT
TACCTGACCT TGGTACTCAT AGTACCTATG ATGCTCTCGA TGGCTGCCAG CTACAACATA
GCCCCGGATA CCTTGCAGTG GTTACCCGTA TCCGGGCAGC AGCAAGCGTT AATCGCCTTT
ATCAAGGGCC GTGAAATTCC TATGTTGCAG TTACTGCTCT CATCACTAAC GACGCTGGTG
ATCGCACTCG GACTGACATT TGGCATGGAG AGGTCACTCA AGAGCGAGAA GATTGTCTTC
GGATTATAA
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| Protein sequence | MMSNIMTMLR KELIDAARDK RSVMAGLYYA IGTPLLMCGM FMLLIGQMSS PEDLNIKIEN
GERAPDLVKY LSSQGITHGD AQDKSLDIKD IRLIFSDDYA EQMAKGLSAE VTLVADNSNE
KLQNSIRRLE KNLQTYSAEM GSLRLIARGI DPRVVQPIKV NVEDQATPDS KGGVILGVAT
MTMIYAVFIS GMNLAIDTSA GERERNSLAL LLSHPVSTRN IVLTKVLAVT VFAMLGLLLT
LIISKLSYSF VPWQELGFTV SISTNFILLM LLIGLPIAIM AASLQLFVSF MAKTFKEAQS
YLTLVLIVPM MLSMAASYNI APDTLQWLPV SGQQQALIAF IKGREIPMLQ LLLSSLTTLV
IALGLTFGME RSLKSEKIVF GL
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